LOCUS BC001163 3304 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chemokine (C-X3-C motif) ligand 1, mRNA (cDNA clone
MGC:1623 IMAGE:3503870), complete cds.
ACCESSION BC001163
VERSION BC001163.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3304)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3304)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: d Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 54111253.
FEATURES Location/Qualifiers
source 1..3304
/db_xref="H-InvDB:HIT000030186"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1623 IMAGE:3503870"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..3304
/gene="CX3CL1"
/gene_synonym="ABCD-3"
/gene_synonym="C3Xkine"
/gene_synonym="CXC3"
/gene_synonym="CXC3C"
/gene_synonym="fractalkine"
/gene_synonym="neurotactin"
/gene_synonym="NTN"
/gene_synonym="NTT"
/db_xref="GeneID:6376"
/db_xref="HGNC:HGNC:10647"
/db_xref="MIM:601880"
CDS 68..1261
/gene="CX3CL1"
/gene_synonym="ABCD-3"
/gene_synonym="C3Xkine"
/gene_synonym="CXC3"
/gene_synonym="CXC3C"
/gene_synonym="fractalkine"
/gene_synonym="neurotactin"
/gene_synonym="NTN"
/gene_synonym="NTT"
/codon_start=1
/product="chemokine (C-X3-C motif) ligand 1"
/protein_id="AAH01163.1"
/db_xref="GeneID:6376"
/db_xref="HGNC:HGNC:10647"
/db_xref="MIM:601880"
/translation="MAPISLSWLLRLATFCHLTVLLAGQHHGVTKCNITCSKMTSKIP
VALLIHYQQNQASCGKRAIILETRQHRLFCADPKEQWVKDAMQHLDRQAAALTRNGGT
FEKQIGEVKPRTTPAAGGMDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTG
VTGSSGTRLPPTPKAQDGGPVGTELFRVPPVSTAATWQSSAPHQPGPSLWAEAKTSEA
PSTQDPSTQASTASSPAPEENAPSEGQRVWGQGQSPRPENSLEREEMGPVPAHTDAFQ
DWGPGSMAHVSVVPVSSEGTPSREPVASGSWTPKAEEPIHATMDPQRLGVLITPVPDA
QAATRRQAVGLLAFLGLLFCLGVAMFTYQSLQGCPRKMAGEMAEGLRYIPRSCGSNSY
VLVPV"
BASE COUNT 666 a 1048 c 909 g 681 t
ORIGIN
1 ctgagctctg ccgcctggct ctagccgcct gcctggcccc cgccgggact cttgcccacc
61 ctcagccatg gctccgatat ctctgtcgtg gctgctccgc ttggccacct tctgccatct
121 gactgtcctg ctggctggac agcaccacgg tgtgacgaaa tgcaacatca cgtgcagcaa
181 gatgacatca aagatacctg tagctttgct catccactat caacagaacc aggcatcatg
241 cggcaaacgc gcaatcatct tggagacgag acagcacagg ctgttctgtg ccgacccgaa
301 ggagcaatgg gtcaaggacg cgatgcagca tctggaccgc caggctgctg ccctaactcg
361 aaatggcggc accttcgaga agcagatcgg cgaggtgaag cccaggacca cccctgccgc
421 cgggggaatg gacgagtctg tggtcctgga gcccgaagcc acaggcgaaa gcagtagcct
481 ggagccgact ccttcttccc aggaagcaca gagggccctg gggacctccc cagagctgcc
541 gacgggcgtg actggttcct cagggaccag gctccccccg acgccaaagg ctcaggatgg
601 agggcctgtg ggcacggagc ttttccgagt gcctcccgtc tccactgccg ccacgtggca
661 gagttctgct ccccaccaac ctgggcccag cctctgggct gaggcaaaga cctctgaggc
721 cccgtccacc caggacccct ccacccaggc ctccactgcg tcctccccag ccccagagga
781 gaatgctccg tctgaaggcc agcgtgtgtg gggtcaggga cagagcccca ggccagagaa
841 ctctctggag cgggaggaga tgggtcccgt gccagcgcac acggatgcct tccaggactg
901 ggggcctggc agcatggccc acgtctctgt ggtccctgtc tcctcagaag ggacccccag
961 cagggagcca gtggcttcag gcagctggac ccctaaggct gaggaaccca tccatgccac
1021 catggacccc cagaggctgg gcgtccttat cactcctgtc cctgacgccc aggctgccac
1081 ccggaggcag gcggtggggc tgctggcctt ccttggcctc ctcttctgcc tgggggtggc
1141 catgttcacc taccagagcc tccagggctg ccctcgaaag atggcaggag agatggcgga
1201 gggccttcgc tacatccccc ggagctgtgg tagtaattca tatgtcctgg tgcccgtgtg
1261 aactcctctg gcctgtgtct agttgtttga ttcagacagc tgcctgggat ccctcatcct
1321 catacccacc cccacccaag ggcctggcct gagctgggat gattggaggg gggaggtggg
1381 atcctccagg tgcacaagct ccaagctccc aggcattccc caggaggcca gccttgacca
1441 ttctccacct tccagggaca gagggggtgg cctcccaact caccccagcc ccaaaactct
1501 cctctgctgc tggctggtta gaggttccct ttgacgccat cccagcccca atgaacaatt
1561 atttattaaa tgcccagccc cttctgaccc atgctgccct gtgagtacta cagtcctccc
1621 atctcacaca tgagcatcag gccaggccct ctgcccactc cctgcaacct gattgtgtct
1681 cttggtcctg ctgcagttgc cagtcacccc ggccacctgc ggtgctatct cccccagccc
1741 catcctctgt acagagccca cgcccccact ggtgacatgt cttttcttgc atgaggctag
1801 tgtggtgttt cctggcactg cttccagtga ggctctgccc ttggttaggc attgtgggaa
1861 ggggagataa gggtatctgg tgactttcct ctttggtcta cactgtgctg agtctgaagg
1921 ctgggttctg atcctagttc caccatcaag ccaccaacat actcccatct gtgaaaggaa
1981 agagggaggt aaggaatacc tgtccccctg acaacactca ttgacctgag gcccttctct
2041 ccagcccctg gatgcagcct cacagtcctt accagcagag caccttagac agtccctgcc
2101 aatggactaa cttgtctttg gaccctgagg cccagagggc ctgcaaggga gtgagttgat
2161 agcacagacc ctgccctgtg ggcccccaaa tggaaatggg cagagcagag accatccctg
2221 aaggccccgc ccaggcttag tcactgagac agcccgggct ctgcctccca tcacccgcta
2281 agagggaggg agggctccag acacatgtcc aagaagccca ggaaaggctc caggagcagc
2341 cacattcctg atgcttcttc agagactcct gcaggcagcc aggccacaag acccttgtgg
2401 tcccacccca cacacgccag attctttcct gaggctgggc tcccttccca cctctctcac
2461 tccttgaaaa cactgttctc tgccctccaa gaccttctcc ttcacctttg tccccaccgc
2521 agacaggacc agggatttcc atgatgtttt ccatgagtcc cctgtttgtt tctgaaaggg
2581 acgctacccg ggaagggggc tgggacatgg gaaaggggaa gttgtaggca taaagtcagg
2641 ggttcccttt tttggctgct gaaggctcga gcatgcctgg atggggctgc accggctggc
2701 ctggcccctc agggtccctg gtggcagctc acctctccct tggattgtcc ccgacccttg
2761 ccgtctacct gaggggcctc ttatgggctg ggttctaccc aggtgctagg aacactcctt
2821 cacagatggg tgcttggagg aaggaaaccc agctctggtc catagagagc aagacgctgt
2881 gctgccctgc ccacctggcc tctgcactcc cctgctgggt gtggcgcagc atattcagga
2941 agctcagggc ctggctcagg tggggtcact ctggcagctc agagagggtg ggagtgggtc
3001 caatgcactt tgttctggct cttccaggct gggagagcct ttcaggggtg ggacaccctg
3061 tgatggggcc ctgcctcctt tgtgaggaag ccgctggggc cagttggtcc cccttccatg
3121 gactttgtta gtttctccaa gcaggacatg gacaaggatg atctaggaag actttggaaa
3181 gagtaggaag actttggaaa gacttttcca accctcatca ccaacgtctg tgccattttg
3241 tattttacta ataaaattta aaagtcttgt gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
3301 aaaa
//