LOCUS BC001155 1381 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens poly(rC) binding protein 2, mRNA (cDNA clone MGC:1457
IMAGE:3356341), complete cds.
ACCESSION BC001155
VERSION BC001155.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1381)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1381)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: c Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 54873621.
FEATURES Location/Qualifiers
source 1..1381
/db_xref="H-InvDB:HIT000030179"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1457 IMAGE:3356341"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1381
/gene="PCBP2"
/gene_synonym="hnRNP-E2"
/gene_synonym="HNRPE2"
/db_xref="GeneID:5094"
/db_xref="HGNC:HGNC:8648"
/db_xref="MIM:601210"
CDS 89..1177
/gene="PCBP2"
/gene_synonym="hnRNP-E2"
/gene_synonym="HNRPE2"
/codon_start=1
/product="poly(rC) binding protein 2"
/protein_id="AAH01155.1"
/db_xref="GeneID:5094"
/db_xref="HGNC:HGNC:8648"
/db_xref="MIM:601210"
/translation="MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESG
ARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRL
VVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVK
QICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDL
EGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWA
GLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI
TGSAASISLAQYLINVRLSSETGGMGSS"
BASE COUNT 385 a 353 c 321 g 322 t
ORIGIN
1 ctcgcgcctg cagtttttgg ctttcacccc caaccagtga ccaaagactt gaccactcaa
61 agtccagctc cccagaacac tgctcgacat ggacaccggt gtgattgaag gtggattaaa
121 tgtcactctc accatccggc tacttatgca tggaaaggaa gttggcagta tcatcggaaa
181 gaaaggagaa tcagttaaga agatgcgcga ggagagtggt gcacgtatca acatctcaga
241 agggaattgt cctgagagaa ttatcacttt ggctggaccc actaatgcca tcttcaaagc
301 ctttgctatg atcattgaca aactggaaga ggacataagc agctctatga ccaatagcac
361 agctgccagt agacccccgg tcaccctgag gctggtggtc cctgctagtc agtgtggctc
421 tctcattgga aaaggtggat gcaagatcaa ggaaatacga gagagtacag gggctcaggt
481 ccaggtggca ggggatatgc tacccaactc aactgagcgg gccatcacta ttgctggcat
541 tccacaatcc atcattgagt gtgtcaaaca gatctgcgtg gtcatgttgg agtccccccc
601 gaagggcgtg accatcccgt accggcccaa gccgtccagc tctccggtca tctttgcagg
661 tggtcaggac aggtacagca caggcagcga cagtgcgagc tttccccaca ccaccccgtc
721 catgtgcctc aaccctgacc tggagggacc acctctagag gcctatacca ttcaaggaca
781 gtatgccatt ccacagccag atttgaccaa gctgcaccag ttggcaatgc aacagtctca
841 ttttcccatg acgcatggca acaccggatt cagtggcatt gaatccagct ctccagaggt
901 gaaaggctat tgggcaggtt tggatgcatc tgctcagact acttctcatg aactcaccat
961 tccaaacgat ttgattggct gcataatcgg gcgtcaaggc gccaaaatca atgagatccg
1021 tcagatgtct ggggcgcaga tcaaaattgc gaacccagtg gaaggatcta ctgataggca
1081 ggttaccatc actggatctg ctgccagcat tagcctggct caatatctaa tcaatgtcag
1141 gctttcctcg gagacgggtg gcatggggag cagctagaac aatgcagatt catccataat
1201 ccctttctgc tgttcaccac cacccatgat ccatctgtgt agtttctgaa cagtcagcga
1261 ttccaggttt taaatagttt gtaaattttc agtttctaca cactttatca tccactcgtg
1321 attttttaat taaagcgttt taattcctaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1381 a
//