LOCUS BC001100 1612 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens proteasome (prosome, macropain) 26S subunit,
non-ATPase, 13, mRNA (cDNA clone MGC:734 IMAGE:3506530), complete
cds.
ACCESSION BC001100
VERSION BC001100.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1612)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1612)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC001100.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: n Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 28872727.
FEATURES Location/Qualifiers
source 1..1612
/db_xref="H-InvDB:HIT000030132"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:734 IMAGE:3506530"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1612
/gene="PSMD13"
/gene_synonym="HSPC027"
/gene_synonym="p40.5"
/db_xref="GeneID:5719"
/db_xref="HGNC:HGNC:9558"
/db_xref="MIM:603481"
CDS 56..1186
/gene="PSMD13"
/gene_synonym="HSPC027"
/gene_synonym="p40.5"
/codon_start=1
/product="proteasome (prosome, macropain) 26S subunit,
non-ATPase, 13"
/protein_id="AAH01100.1"
/db_xref="GeneID:5719"
/db_xref="HGNC:HGNC:9558"
/db_xref="MIM:603481"
/translation="MKDVPGFLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDF
VQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTRE
KVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSS
KYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLM
HPVLESLRNTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLC
LMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMT
WVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDILT"
BASE COUNT 419 a 369 c 438 g 386 t
ORIGIN
1 ccccgcggtg ctgacatccc ggttgttctt ctgtgccggg ggtcttcctg ctgtcatgaa
61 ggacgtaccg ggcttcctac agcagagcca gagctccggg cccgggcagc ccgctgtgtg
121 gcaccgtctg gaggagctct acacgaagaa gttgtggcat cagctgacac ttcaggtgct
181 tgattttgtg caggatccgt gctttgccca aggagatggt ctcattaagc tttatgaaaa
241 ctttatcagt gaatttgaac acagggtgaa tcctctgtcc ctcgtggaaa tcattcttca
301 cgtagttaga cagatgactg atcctaatgt ggctcttact tttctggaaa agactcgtga
361 gaaggtgaaa agtagtgatg aggcagtgat cctgtgtaaa acagcaattg gagctctaaa
421 attaaacatc ggggacctac aggttacaaa ggaaacaatt gaagatgttg aagaaatgct
481 caacaacctt cctggtgtga catcggttca cagtcgtttc tatgatctct ccagtaaata
541 ctatcaaaca atcggaaacc acgcgtccta ctacaaagat gctctgcggt ttttgggctg
601 tgttgacatc aaggatctac cagtgtctga gcagcaggag agagccttca cgctggggct
661 agcaggactt ctcggcgagg gagtttttaa ctttggagaa ctcctcatgc accctgtgct
721 ggagtccctg aggaatactg accggcagtg gctgattgac accctctatg ccttcaacag
781 tggcaacgta gagcggttcc agactctgaa gactgcctgg ggccagcagc ctgatttagc
841 agctaatgaa gcccagcttc tgaggaaaat tcagttgttg tgcctcatgg agatgacttt
901 cacacgacct gccaatcaca gacaactcac ttttgaagaa attgccaaaa gtgctaaaat
961 cacagtgaat gaggtggagc ttctggtgat gaaggccctt tcggtggggc tggtgaaagg
1021 cagtatagac gaggtggaca aacgagtcca catgacctgg gtgcagcccc gagtgttgga
1081 tttgcaacag atcaagggaa tgaaggaccg cctggagttc tggtgcacgg atgtgaagag
1141 catggagatg ctggtggagc accaggccca tgacatcctc acctagggcc ccctggttcc
1201 ccgtcgtgtc tcctttgact cacctgagag aggcgtttgc agccaatgaa gctggctgct
1261 cagacggtcg acattgaatt tgggtggggg ttgggatcct gtctgaagta cagactgttc
1321 ttgctctaaa aacaggactg tccctgatgg gagccaggcc acagggagga ggcttctttg
1381 tgggtctctc ctgcagaggg tggaggtctc agggtcttag gtgatacggg agagaaagaa
1441 cgtgccaggc aggaggcccc ctgaagtctg tgtactccga ggtggatctc catccccatc
1501 cacctgtacg gacatctttt ccgttgcagt ttgagaatgt tcctataata aacccctctg
1561 ctttgttcaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//