LOCUS BC001058 2526 bp mRNA linear HUM 22-DEC-2006
DEFINITION Homo sapiens squamous cell carcinoma antigen recognized by T cells,
mRNA (cDNA clone MGC:2038 IMAGE:3504745), complete cds.
ACCESSION BC001058
VERSION BC001058.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2526)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2526)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (11-DEC-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 8, 2003 this sequence version replaced BC001058.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: e Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38788009.
FEATURES Location/Qualifiers
source 1..2526
/db_xref="H-InvDB:HIT000030108"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2038 IMAGE:3504745"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2526
/gene="SART1"
/gene_synonym="Ara1"
/gene_synonym="HOMS1"
/gene_synonym="MGC2038"
/gene_synonym="SART1259"
/gene_synonym="Snu66"
/db_xref="GeneID:9092"
/db_xref="HGNC:HGNC:10538"
/db_xref="MIM:605941"
CDS 42..2444
/gene="SART1"
/gene_synonym="Ara1"
/gene_synonym="HOMS1"
/gene_synonym="MGC2038"
/gene_synonym="SART1259"
/gene_synonym="Snu66"
/codon_start=1
/product="squamous cell carcinoma antigen recognized by T
cells"
/protein_id="AAH01058.1"
/db_xref="GeneID:9092"
/db_xref="HGNC:HGNC:10538"
/db_xref="MIM:605941"
/translation="MGSSKKHRGEKEAAGTTAAAGTGGATEQPPRHREHKKHKHRSGG
SGGSGGERRKRSRERGGERGSGRRGAEAEARSSTHGRERSQAEPSERRVKREKRDDGY
EAAASSKTSSGDASSLSIEETNKLRAKLGLKPLEVNAIKKEAGTKEEPVTADVINPMA
LRQREELREKLAAAKEKRLLNQKLGKIKTLGEDDPWLDDTAAWIERSRQLQKEKDLAE
KRAKLLEEMDQEFGVSTLVEEEFGQRRQDLYSARDLQGLTVEHAIDSFREGETMILTL
KDKGVLQEEEDVLVNVNLVDKERAEKNVELRKKKPDYLPYAEDESVDDLAQQKPRSIL
SKYDEELEGERPHSFRLEQGGTADGLRERELEEIRAKLRLQAQSLSTVGPRLASEYLT
PEEMVTFKKTKRRVKKIRKKEKEVVVRADDLLPLGDQTQDGDFGSRLRGRGRRRVSEV
EEEKEPVPQPLPSDDTRVENMDISDEEEGGAPPPGSPQVLEEDEAELELQKQLEKGRR
LRQLQQLQQLRDSGEKVVEIVKKLESRQRGWEEDEDPERKGAIVFNATSEFCRTLGEI
PTYGLAGNREEQEELMDFERDEERSANGGSESDGEENIGWSTVNLDEEKQQQDFSASS
TTILDEEPIVNRGLAAALLLCQNKGLLETTVQKVARVKAPNKSLPSAVYCIEDKMAID
DKYSRREEYRGFTQDFKEKDGYKPDVKIEYVDETGRKLTPKEAFRQLSHRFHGKGSGK
MKTERRMKKLDEEALLKKMSSSDTPLGTVALLQEKQKAQKTPYIVLSGSGKSMNANTI
TK"
BASE COUNT 629 a 658 c 905 g 334 t
ORIGIN
1 ctgggctcgg cggcagccgg gctcggagtg gacgtgccac tatggggtcg tccaagaagc
61 atcgcggaga gaaggaggcg gccgggacga cggcggcggc cggcaccggg ggtgccaccg
121 agcagccgcc gcggcaccgg gaacacaaaa aacacaagca ccggagtggc ggcagtggcg
181 gtagcggtgg cgaacgacgg aagcggagcc gggaacgtgg gggcgagcgc gggagcgggc
241 ggcgcggggc cgaagctgag gcccggagca gcacgcacgg gcgggagcgc agccaggcag
301 agccctccga gcggcgcgtg aagcgggaga agcgcgatga cggctacgag gccgctgcca
361 gctccaaaac tagctcaggc gatgcctcct cactcagcat cgaggagact aacaaactcc
421 gggcaaagtt ggggctgaaa cccttggagg ttaatgccat caagaaggag gcgggcacca
481 aggaggagcc cgtgacagct gatgtcatca accctatggc cttgcgacag cgagaggagc
541 tgcgggagaa gctggcagct gccaaggaga agcgcctgct gaaccaaaag ctggggaaga
601 taaagaccct aggagaggat gacccctggc tggacgacac tgcagcctgg atcgagagga
661 gccggcagct gcagaaggag aaggacctgg cagagaagag ggccaagtta ctggaggaga
721 tggaccaaga gtttggtgtc agcactctgg tggaggagga gttcgggcag aggcggcagg
781 acctgtacag tgcccgggac ctgcagggcc tcaccgtgga gcatgccatt gattccttcc
841 gagaagggga gacaatgatt cttaccctca aggacaaagg cgtgctgcag gaggaggagg
901 acgtgctggt gaacgtgaac ctggtggata aggagcgggc agagaaaaat gtggagctgc
961 ggaagaagaa gcctgactac ctgccctatg ccgaggacga gagcgtggac gacctggcgc
1021 agcaaaaacc tcgctctatc ctgtccaagt atgacgaaga gcttgaaggg gagcggccac
1081 attccttccg cttggagcag ggcggcacgg ctgatggcct gcgggagcgg gagctggagg
1141 agatccgggc caagctgcgg ctgcaggctc agtccctgag cacagtgggg ccccggctgg
1201 cctccgaata cctcacgcct gaggagatgg tgacctttaa aaagaccaag cggagggtga
1261 agaaaatccg caagaaggag aaggaggtag tagtgcgggc agatgacttg ctgcctctcg
1321 gggaccagac tcaggatggg gactttggtt ccagactgcg gggacggggt cgccgccgag
1381 tgtccgaagt ggaggaggag aaggagcctg tgcctcagcc cctgccgtcg gacgacaccc
1441 gagtggagaa catggacatc agtgatgagg aggaaggtgg agctccaccg ccggggtccc
1501 cgcaggtgct ggaggaggac gaggcggagc tggagctgca gaagcagctg gagaagggac
1561 gccggctgcg acagttacag cagctacagc agctgcgaga cagtggcgag aaggtggtgg
1621 agattgtgaa gaagctggag tctcgccagc ggggctggga ggaggatgag gatcccgagc
1681 ggaagggggc catcgtgttc aacgccacgt ccgagttctg ccgcaccttg ggggagatcc
1741 ccacctacgg gctggctggc aatcgcgagg agcaggagga gctcatggac tttgaacggg
1801 atgaggagcg ctcagccaac ggtggctccg aatctgacgg ggaggagaac atcggctgga
1861 gcacggtgaa cctggacgag gagaagcagc agcaggattt ctctgcttcc tccaccacca
1921 tcctggacga ggaaccgatc gtgaataggg ggctggcagc tgccctgctc ctgtgtcaga
1981 acaaagggct gctggagacc acagtgcaga aggtggcccg ggtgaaggcc cccaacaagt
2041 cgctgccctc agccgtgtac tgcatcgagg ataagatggc catcgatgac aagtacagcc
2101 ggagggagga ataccgaggc ttcacacagg acttcaagga gaaggacggc tacaaacccg
2161 acgttaagat cgaatacgtg gatgagacgg gccggaaact cacacccaag gaggctttcc
2221 ggcagctgtc gcaccgcttc catggcaagg gctcaggcaa gatgaagaca gagcggcgga
2281 tgaagaagct ggacgaggag gcgctcctga agaagatgag ctccagcgac acgcccctgg
2341 gcaccgtggc cctgctccag gagaagcaga aggctcagaa gaccccctac atcgtgctca
2401 gcggcagcgg caagagcatg aacgcgaaca ccatcaccaa gtgacagcgc cctcccgccc
2461 cggccctgcc tcaaccttca tattaaataa agctccctcc ttaaaaaaaa aaaaaaaaaa
2521 aaaaaa
//