LOCUS BC001023 1203 bp mRNA linear HUM 27-MAY-2005
DEFINITION Homo sapiens major histocompatibility complex, class II, DR beta 3,
mRNA (cDNA clone MGC:2284 IMAGE:3345335), complete cds.
ACCESSION BC001023
VERSION BC001023.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1203)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1203)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC001023.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: n Column: 21.
FEATURES Location/Qualifiers
source 1..1203
/db_xref="H-InvDB:HIT000030076_03"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2284 IMAGE:3345335"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1203
/gene="HLA-DRB3"
/db_xref="GeneID:3125"
CDS 61..861
/gene="HLA-DRB3"
/codon_start=1
/product="HLA-DRB3 protein"
/protein_id="AAH01023.1"
/db_xref="GeneID:3125"
/translation="MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKC
HFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRG
QVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRW
FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWR
ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS"
BASE COUNT 270 a 327 c 331 g 275 t
ORIGIN
1 gttctccctg agtgagactc acctgctcct ctggcccctg gtcctgtcct gttctccagc
61 atggtgtgtc tgaagctccc tggaggctcc tgcatggcag ctctgacagt gacactgatg
121 gtgctgagct ccccactggc tttggctggg gacacccaac cacgtttcct gtggcagggt
181 aagtataagt gtcatttctt caacgggacg gagcgggtgc agttcctgga aagactcttc
241 tataaccagg aggagttcgt gcgcttcgac agcgacgtgg gggagtaccg ggcggtgacg
301 gagctagggc ggcctgtcgc cgagtcctgg aacagccaga aggacatcct ggaggacagg
361 cggggccagg tggacaccgt gtgcagacac aactacgggg ttggtgagag cttcacagtg
421 cagcggcgag tccatcctga ggtgactgtg tatcctgcca agactcagcc cctgcagcac
481 cacaacctcc tggtctgctc tgtgagtggt ttctatccag gcagcattga agtcaggtgg
541 ttccggaacg gccaggaaga gaaggctggg gtggtgtcca caggcctgat ccagaatgga
601 gactggacct tccagaccct ggtgatgctg gaaacagttc ctcggagtgg agaagtttac
661 acctgccaag tggagcaccc aagtgtgatg agccctctca cagtggaatg gagagcacgg
721 tctgaatctg cacagagcaa gatgctgagt ggagtcgggg gctttgtgct gggcctgctc
781 ttccttgggg ccgggttgtt catctacttc aggaatcaga aaggacactc tggacttcag
841 ccaacaggat tcctgagctg aagtgaagat gaccacattc aaggaaaaac cttctgcccc
901 agctttgcag gatgaaacac ttccccgctt ggctctcatt cttccacaag agagaccttt
961 ctccggacct ggttgctact ggttcagcaa ctctgcagaa aatgtcctcc cctgtggctg
1021 cctcagctca tgcctttggc ctgaagtccc agcattgatg gcagcccctc atcttccaag
1081 ttttgtgctc ccctttacct aacgcttcct gcctcccatg catctgtact cctcctgtgc
1141 cacaaacaca ttacattatt aaatgtttct caaacatgga aaaaaaaaaa aaaaaaaaaa
1201 aaa
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