LOCUS BC001017 2819 bp mRNA linear HTC 27-OCT-2008
DEFINITION Homo sapiens PDZ and LIM domain 3, mRNA (cDNA clone IMAGE:3345880),
with apparent retained intron.
ACCESSION BC001017
VERSION BC001017.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2819)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2819)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: l Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7656882
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..2819
/db_xref="H-InvDB:HIT000030072"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3345880"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_20"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
BASE COUNT 863 a 665 c 625 g 666 t
ORIGIN
1 cggagtggct gccctgcgcg gggacactca gagcccggtg ggcgggagga aggcggcatg
61 ccccagacgg tgatcctccc gggccctgcg ccctggggct tcaggctctc agggggcata
121 gacttcaacc agcctttggt catcaccagg attacaccag gaagcaaggc ggcagctgcc
181 aacctgtgtc ctggagatgt catcctggct attgacggct ttgggacaga gtccatgact
241 catgctgatg cgcaggacag gattaaagca gcagctcacc agctgtgtct caaaattgac
301 aggggagaaa ctcacttatg gtctccacaa gtatctgaag atgggaaagc ccatcctttc
361 aaaatcaact tagaatcaga accacaggaa ttcaaaccca ttggtaccgc gcacaacaga
421 agggcccagc cttttgttgc agctgcaaac attgatgaca aaagacaggt agtgagcgct
481 tcctataact cgccaattgg gctctattca actagcaata tacaagatgc gcttcacgga
541 cagctgcggg gtctcattcc tagctcacct caaaagacgg gaactacttt gaacacaagc
601 ataatattcg gcccaaacct ttcgtgatcc cgggccgaag caggtcataa gcgctgagac
661 tgtggagttt gcagtgcatg cttcttaaat cagttcttac taatcatcaa gaaaagtaac
721 tggtagatgt ttggagtggc ttttctcatt gcgaagctta tttcaaaagc aaaaagaaac
781 aaactcactt ggcagagaac agaagccaaa taacttgcat ttccaagagt aaatattgac
841 aagatgacag agctgtgaaa ttgtatgcaa tcaccacgtg tatttatagc gaacacccct
901 gaggctctgg ggatcccatc cagaacactg tgacctttga gtcgggcagt cagtatgtct
961 atcccaggtc aggaaagccc tgccagcagg agcgagcatg gaaaccagcc ccggttagga
1021 ggaaggaatc aggtgaacaa gccagaatga taaggagcaa gctcttcctt ctcgtctctc
1081 agtagagaaa ctgatcatct tcagatcatc cttttcaaat atcttctcta gaaattgaac
1141 tccaacctaa ggggaaagaa aataatgccc tgtattgcca aatcaggaaa cagtgacttc
1201 aggaaacctc tgttccatcc ttctgacctc agctaagcca gtcagcccac aggaaggaag
1261 ctggtggtta gaccggattg attccgacag gaacattgaa tatgatttac cgcagctgtt
1321 gcaaactgat ggcccatagg tggatttatt tcacaggcat gttttattta attcttttgt
1381 ttaaaaaaaa aaaaagaatt taagtgcctt tagacagaac atttaaactc accatcttgt
1441 caaaatgcac atcactctta agtgtgtgag acacggccca ttttcataca tgtgtgacct
1501 cctggcccct ctagacaccc gagcttatga ctcctgtcat aagctgcgga tagcaggtca
1561 tcccttatgt atgatttcca tgtccagacc tttcaggaag ctacaggcag agccaggtga
1621 ttgtctcaaa atatgccaga caattcttgt gatatcagat ccagaaagga gccctggacc
1681 agaggagcag gagaaaggcg ttaagaaggc aaccatgagc aaacacatct tcccccccct
1741 agaacgtgag ctcagtgtct gcaggggcct ggtctgactg gctcaacatt atacccccag
1801 cacctagaaa tgagacagaa taaatgctca ataagcgacc atctacaaac agacaaaata
1861 aatgcccaat aaatgctcac tggataaagg aatcaaatcc tgagggtgca caacatttcc
1921 caagcaagtg gcaagaagag tccagagccg tctcgctccc gatgctggca gctctgtgtc
1981 ctctcctgct tctctctatg tgttccctcg ttcatactct gttctcatct gcatcttttc
2041 cgtttctcca ctttcaacag cttccccacc ccaacccaac cccaataaca aaacactgga
2101 tttaaagtta aaaggatatg atattttact gttgaatata tacaacttcc caaagaagca
2161 tagtaaaatt aatcacttgc attcttttca ggttagtgtg actgagtcca cccacacaag
2221 ctctggggct tcagaaggct tgaataaagt gatacgttag agtaacacat atcctgcctt
2281 tactaaaaac ctataacatt taattttata aaaagtcagg aaagtcagag aatcctaggt
2341 atataatcac cttttaaaaa aatttttcat tttaacttaa acatagggat aatggcaagc
2401 cactcataat gttgtcattt gaagatcaca ccttttaatg tagctgaatt tggaagagag
2461 aaggagagaa acagaaatga gaaggtttgc ttaaaaaaca gatgccagtg cacaaatctt
2521 aaagaattat aaggcctggt gcgatggctc acacctgtaa tcccagcact ttgggagaca
2581 gaggtgggcg aatcacaagg tcaggagttc gagaccatcc tggccaacat ggtgtaaccc
2641 catgtctacc aaaaatacaa aaaattagct gggcatggtg gcgggcacct gtaatcccag
2701 ctactgggga ggctgaggca ggagaatcgc ctgagcctgg gaggcggagg ttgtagtgag
2761 ctgagatcat gccactgcaa caagcgtgag actccatctc aaaaaaaaaa aaaaaaaaa
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