LOCUS       BC001003                1261 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens synovial sarcoma, X breakpoint 1, mRNA (cDNA clone
            MGC:5162 IMAGE:3445470), complete cds.
ACCESSION   BC001003
VERSION     BC001003.2
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1261)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (16-NOV-2000) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     On Feb 14, 2001 this sequence version replaced BC001003.1.
            Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Baylor College of Medicine Human Genome
            Sequencing Center
            Center code: BCM-HGSC
            Web site: http://www.hgsc.bcm.tmc.edu/cdna/
            Contact: amg@bcm.tmc.edu
            Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
            Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
            A.N., Gibbs, R.A.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 3 Row: f Column: 23
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 31581528.
FEATURES             Location/Qualifiers
     source          1..1261
                     /db_xref="H-InvDB:HIT000030060"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:5162 IMAGE:3445470"
                     /tissue_type="Placenta, choriocarcinoma"
                     /clone_lib="NIH_MGC_10"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..1261
                     /gene="SSX1"
                     /gene_synonym="MGC5162"
                     /gene_synonym="SSRC"
                     /db_xref="GeneID:6756"
                     /db_xref="HGNC:HGNC:11335"
                     /db_xref="MIM:312820"
     CDS             82..648
                     /gene="SSX1"
                     /gene_synonym="MGC5162"
                     /gene_synonym="SSRC"
                     /codon_start=1
                     /product="synovial sarcoma, X breakpoint 1"
                     /protein_id="AAH01003.1"
                     /db_xref="GeneID:6756"
                     /db_xref="HGNC:HGNC:11335"
                     /db_xref="MIM:312820"
                     /translation="MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSE
                     KISYVYMKRNYKAMTKLGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFG
                     RLHRIIPKIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRG
                     KHAWTHRLRERKQLVIYEEISDPEEDDE"
BASE COUNT          386 a          312 c          266 g          297 t
ORIGIN      
        1 ccaactgctg ccaactcgcc accactgctg ccgacctcgc aaccactgct ttgtctctga
       61 agtgagactg ctcctggtgc catgaacgga gacgacacct ttgcaaagag acccagggat
      121 gatgctaaag catcagagaa gagaagcaag gcctttgatg atattgccac atacttctct
      181 aagaaagagt ggaaaaagat gaaatactcg gagaaaatca gctatgtgta tatgaagaga
      241 aactataagg ccatgactaa actaggtttc aaagtcaccc tcccaccttt catgtgtaat
      301 aaacaggcca cagacttcca ggggaatgat tttgataatg accataaccg caggattcag
      361 gttgaacatc ctcagatgac tttcggcagg ctccacagaa tcatcccgaa gatcatgccc
      421 aagaagccag cagaggacga aaatgattcg aagggagtgt cagaagcatc tggcccacaa
      481 aacgatggga aacaactgca ccccccagga aaagcaaata tttctgagaa gattaataag
      541 agatctggac ccaaaagggg gaaacatgcc tggacccaca gactgcgtga gagaaagcag
      601 ctggtgattt atgaagagat cagcgaccct gaggaagatg acgagtaact cccctggggg
      661 atacgacaca tgcccttgat gagaagcaga acgtggtgac ctttcacgaa catgggcatg
      721 gctgcggctc cctcgtcatc aggtgcatag caagtgaaag caagtgttca caacggtgaa
      781 acttgagcgt catttttctt agtgtgccaa gagttcgatg ttagtgtttc cattgtattt
      841 tcttacagtg tgccattctg ttagatacta tccttataat tgatgagcaa gacatactga
      901 atgcatattt cggtttgtgt atccatgcac ctacgtcaga aaacaagtat tgtcaggtat
      961 tctctccata gaacagcact atcctcatct ctccccagat gtgactactg agggcagttc
     1021 tgagtgttta atttcagact ttttcctctg catttacaca cacacacaca cacacacgca
     1081 cacacacaca ccaagtacca gtataagcat ctcccatctg cttttcccat tgccatgcgt
     1141 cctggtcaag cccccctcac tctgtttcct ggtcagcatg tactcccctc atccgattcc
     1201 cctgtatcag tcactgacag ttaataaacc tttgcaaacg ttcaaaaaaa aaaaaaaaaa
     1261 a
//