LOCUS BC001003 1261 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens synovial sarcoma, X breakpoint 1, mRNA (cDNA clone MGC:5162 IMAGE:3445470), complete cds. ACCESSION BC001003 VERSION BC001003.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1261) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1261) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Feb 14, 2001 this sequence version replaced BC001003.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 3 Row: f Column: 23 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 31581528. FEATURES Location/Qualifiers source 1..1261 /db_xref="H-InvDB:HIT000030060" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:5162 IMAGE:3445470" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_10" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1261 /gene="SSX1" /gene_synonym="MGC5162" /gene_synonym="SSRC" /db_xref="GeneID:6756" /db_xref="HGNC:HGNC:11335" /db_xref="MIM:312820" CDS 82..648 /gene="SSX1" /gene_synonym="MGC5162" /gene_synonym="SSRC" /codon_start=1 /product="synovial sarcoma, X breakpoint 1" /protein_id="AAH01003.1" /db_xref="GeneID:6756" /db_xref="HGNC:HGNC:11335" /db_xref="MIM:312820" /translation="MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSE KISYVYMKRNYKAMTKLGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFG RLHRIIPKIMPKKPAEDENDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRG KHAWTHRLRERKQLVIYEEISDPEEDDE" BASE COUNT 386 a 312 c 266 g 297 t ORIGIN 1 ccaactgctg ccaactcgcc accactgctg ccgacctcgc aaccactgct ttgtctctga 61 agtgagactg ctcctggtgc catgaacgga gacgacacct ttgcaaagag acccagggat 121 gatgctaaag catcagagaa gagaagcaag gcctttgatg atattgccac atacttctct 181 aagaaagagt ggaaaaagat gaaatactcg gagaaaatca gctatgtgta tatgaagaga 241 aactataagg ccatgactaa actaggtttc aaagtcaccc tcccaccttt catgtgtaat 301 aaacaggcca cagacttcca ggggaatgat tttgataatg accataaccg caggattcag 361 gttgaacatc ctcagatgac tttcggcagg ctccacagaa tcatcccgaa gatcatgccc 421 aagaagccag cagaggacga aaatgattcg aagggagtgt cagaagcatc tggcccacaa 481 aacgatggga aacaactgca ccccccagga aaagcaaata tttctgagaa gattaataag 541 agatctggac ccaaaagggg gaaacatgcc tggacccaca gactgcgtga gagaaagcag 601 ctggtgattt atgaagagat cagcgaccct gaggaagatg acgagtaact cccctggggg 661 atacgacaca tgcccttgat gagaagcaga acgtggtgac ctttcacgaa catgggcatg 721 gctgcggctc cctcgtcatc aggtgcatag caagtgaaag caagtgttca caacggtgaa 781 acttgagcgt catttttctt agtgtgccaa gagttcgatg ttagtgtttc cattgtattt 841 tcttacagtg tgccattctg ttagatacta tccttataat tgatgagcaa gacatactga 901 atgcatattt cggtttgtgt atccatgcac ctacgtcaga aaacaagtat tgtcaggtat 961 tctctccata gaacagcact atcctcatct ctccccagat gtgactactg agggcagttc 1021 tgagtgttta atttcagact ttttcctctg catttacaca cacacacaca cacacacgca 1081 cacacacaca ccaagtacca gtataagcat ctcccatctg cttttcccat tgccatgcgt 1141 cctggtcaag cccccctcac tctgtttcct ggtcagcatg tactcccctc atccgattcc 1201 cctgtatcag tcactgacag ttaataaacc tttgcaaacg ttcaaaaaaa aaaaaaaaaa 1261 a //