LOCUS BC000996 1237 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens jumping translocation breakpoint, mRNA (cDNA clone
MGC:5120 IMAGE:2901221), complete cds.
ACCESSION BC000996
VERSION BC000996.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1237)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1237)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Feb 14, 2001 this sequence version replaced BC000996.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: h Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 38455406.
FEATURES Location/Qualifiers
source 1..1237
/db_xref="H-InvDB:HIT000030055"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5120 IMAGE:2901221"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1237
/gene="JTB"
/gene_synonym="B PAR"
/gene_synonym="hJT"
/gene_synonym="HJTB"
/gene_synonym="HSPC222"
/gene_synonym="PAR"
/db_xref="GeneID:10899"
/db_xref="HGNC:HGNC:6201"
/db_xref="MIM:604671"
CDS 373..813
/gene="JTB"
/gene_synonym="B PAR"
/gene_synonym="hJT"
/gene_synonym="HJTB"
/gene_synonym="HSPC222"
/gene_synonym="PAR"
/codon_start=1
/product="jumping translocation breakpoint"
/protein_id="AAH00996.1"
/db_xref="GeneID:10899"
/db_xref="HGNC:HGNC:6201"
/db_xref="MIM:604671"
/translation="MLAGAGRPGLPQGRHLCWLLCAFTLKLCQAEAPVQEEKLSASTS
NLPCWLVEEFVVAEECSPCSNFRAKTTPECGPTGYVEKITCSSSKRNEFKSCRSALME
QRLFWKFEGAVVCVALIFACLVIIRQRQLDRKALEKVRKQIESI"
BASE COUNT 290 a 343 c 313 g 291 t
ORIGIN
1 ggaacaccgg gccccgagct cggtcccgcg cccgaggatc ctccacgggg ctagatggct
61 gcgtcggggg cgggagcgga ggtgagcggg cgctagggcc gcgagccccc gccggccctt
121 cctccagcgc cctgcggacc ccgcagaagg cgctcgcctc cctagcccgc aaaaacatat
181 cgatttttct cgctgtggca acggggacgt cctgatagat cctctgctcc aataggcaac
241 tccggccttc cctgccctga cctggaacct ctgggagggc tgcagagtaa gtgccgcctc
301 tgcgctccga cggaggcacg aggcctgtgg agtaggtccc tctgttccga caggtgcgac
361 acttggcgct ccatgcttgc gggtgccggg aggcctggcc tcccccaggg ccgccacctc
421 tgctggttgc tctgtgcttt caccttaaag ctctgccaag cagaggctcc cgtgcaggaa
481 gagaagctgt cagcaagcac ctcaaatttg ccatgctggc tggtggaaga gtttgtggta
541 gcagaagagt gctctccatg ctctaatttc cgggctaaaa ctacccctga gtgtggtccc
601 acaggatatg tagagaaaat cacatgcagc tcatctaaga gaaatgagtt caaaagctgc
661 cgctcagctt tgatggaaca acgcttattt tggaagttcg aaggggctgt cgtgtgtgtg
721 gccctgatct tcgcttgtct tgtcatcatt cgtcagcgac aattggacag aaaggctctg
781 gaaaaggtcc ggaagcaaat cgagtccata tagctacatt ccacccttgt atcctgggtc
841 ttagagaccc tatctcagac agtgaaagtg aaatggactg atttgcactc ttggttcttt
901 ggagccttgt ggtggaatcc ccttttcccc atcttcttct ttcagatcat taatgagcag
961 aataaaaaga gtaaaatggt ttccttccct tctgtaactt ggagcaggaa gtcatggggg
1021 cagagaggga aaggaggtgg ttacttaagg ccccaatcta ccaagtcttc cccaccactt
1081 ctcccttgtt ttccccctct tctactactt atttcaaact tctgggatac aatttcagct
1141 aaaacgttta tttctcactc aaaacttatt tcccctcaac cctataccca aagaagaaat
1201 aaaatcacag atacataaca gaaaaaaaaa aaaaaaa
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