LOCUS BC000989 1247 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens short chain dehydrogenase/reductase family 39U, member
1, mRNA (cDNA clone MGC:5313 IMAGE:2900140), complete cds.
ACCESSION BC000989
VERSION BC000989.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1247)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1247)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Feb 14, 2001 this sequence version replaced BC000989.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: e Column: 1.
FEATURES Location/Qualifiers
source 1..1247
/db_xref="H-InvDB:HIT000030048"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5313 IMAGE:2900140"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1247
/gene="SDR39U1"
/gene_synonym="HCDI"
/db_xref="GeneID:56948"
/db_xref="HGNC:HGNC:20275"
CDS 33..914
/gene="SDR39U1"
/gene_synonym="HCDI"
/codon_start=1
/product="short chain dehydrogenase/reductase family 39U,
member 1"
/protein_id="AAH00989.1"
/db_xref="GeneID:56948"
/db_xref="HGNC:HGNC:20275"
/translation="MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDEL
AASGLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKA
WVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAAARLPGDSTRQVVVRSGVV
LGRGGGAMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGV
APSSATNAEFAQTFGAALGRRAFIPLPSAVVQAVFGRQRAIMLLEGQKVIPRRTLATG
YQYSFPELGAALKEIVA"
BASE COUNT 262 a 366 c 334 g 285 t
ORIGIN
1 actttacgca ggcgcgttag gtcctagtcg ctatgcgtgt gcttgtgggt ggcgggacag
61 gcttcattgg gacagcccta acccagctgc tgaatgccag aggccacgaa gtgacgttgg
121 tctcccgaaa gcccgggccc ggccggatca cgtgggatga gctcgctgca tcggggctgc
181 cgagctgcga tgccgccgtc aacctggccg gagagaacat cctcaaccct ctccgaagat
241 ggaatgaaac cttccaaaaa gaggttctcg gcagccgcct agagaccacc caattgctgg
301 ctaaagccat caccaaagcc ccacaacccc ccaaggcctg ggtcttagtc acaggtgtag
361 cttactacca gcccagtctg actgcggagt atgatgaaga cagcccagga ggggactttg
421 actttttctc caacctcgta accaaatggg aagctgcagc caggcttcct ggagattcta
481 cacgccaggt ggtggtgcgc tcaggggttg tgctgggccg tgggggtggt gccatgggcc
541 acatgctgct gccctttcgc ctgggcctgg ggggccccat cggctcaggc caccaattct
601 tcccctggat acacatcggg gacctggcag gaatcctgac ccatgccctt gaagcaaacc
661 acgtgcacgg ggtcctgaat ggagtggctc catcctccgc cactaatgct gagtttgccc
721 agaccttcgg tgctgccctg ggccgccgag ccttcatccc tctccccagc gctgtggtgc
781 aagctgtctt tgggcgacag cgtgccatca tgctgctgga gggccagaag gtgatcccac
841 ggcgaacact ggccactggc taccagtatt ccttcccaga gctaggggct gccttaaagg
901 aaattgtagc ctaagtaggt catggcaagg gcctgaggcc tgttcctcac aggcttccag
961 gttaggcact gtgaataggc tcagctcctc tagagagctg aagccatctg gttcttagat
1021 tcctctccca gtcctctttc ccattgttct gttgctccac cttattgtct caaggccgta
1081 atctcatcag gttgggacat taatcttttc aactccttgt aagatttccc ggtttggttt
1141 ctctacatgt cctgcagctg ccccacttct cctttacgct gtgtagagaa tgctctgcag
1201 tttaggcaat aaaaataaat tgtctcacta aaaaaaaaaa aaaaaaa
//