LOCUS BC000979 1898 bp mRNA linear HUM 04-OCT-2003 DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 49, mRNA (cDNA clone MGC:5278 IMAGE:2901163), complete cds. ACCESSION BC000979 VERSION BC000979.3 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1898) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1898) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 25, 2003 this sequence version replaced BC000979.2. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 3 Row: d Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 9506608. FEATURES Location/Qualifiers source 1..1898 /db_xref="H-InvDB:HIT000030041" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:5278 IMAGE:2901163" /tissue_type="Cervix, carcinoma" /clone_lib="NIH_MGC_12" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1898 /gene="DDX49" /gene_synonym="FLJ10432" /gene_synonym="R27090_2" /db_xref="GeneID:54555" CDS 413..1177 /gene="DDX49" /gene_synonym="FLJ10432" /gene_synonym="R27090_2" /codon_start=1 /product="DDX49 protein" /protein_id="AAH00979.2" /db_xref="GeneID:54555" /translation="MDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVM DEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEA QAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMM LRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGADQPPLPPGAWTSL RYRWSSTTTPPGSPRSTSTESAGRPVQGGRVRPSRW" misc_feature 413..1036 /gene="DDX49" /gene_synonym="FLJ10432" /gene_synonym="R27090_2" /note="SrmB; Region: Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]" /db_xref="CDD:COG0513" BASE COUNT 421 a 586 c 570 g 321 t ORIGIN 1 caagcggcca caaggatggc aggcttcgcg gagctcgggc tgtcatcgtg gctcgtggaa 61 caatgtcggc agctgggttt gaagcagccc acgcccgtgc agctcggctg catccccgcc 121 atcctggagg gtcgagactg cttgggctgt gctaagacag gcagtgggaa gacagcagcg 181 tttgtccttc ccatcttgca gaagctgtct gaggatccct atggcatctt ctgcctcgtc 241 ctgacaccca ccaggggtcc tgcagaatta aacaagatgg ccccggtgca gtggctcaca 301 cctgtaatcc cagcactttg ggagctccag ggagctggcc taccagatcg cagagcagtt 361 ccgggtcctg gggaagcctc tagggctgaa agactgcatc atcgtcggtg gcatggacat 421 ggtggcccag gcgctggagc tctctcggaa accacacgtg gtcatcgcca cgccggggcg 481 cctggcagat cacctgcgca gctccaacac ttttagtata aagaagatcc gcttcctggt 541 gatggatgag gcagaccggc tgctggaaca gggctgcact gacttcaccg tggacctgga 601 ggccatcctg gcggctgtgc cggcccgcag gcagacactg ctgttcagcg ccacgctgac 661 cgacacactc cgggagctgc agggtctggc caccaaccag cccttcttct gggaagcaca 721 ggccccggtg agcaccgtgg agcagctgga ccagcgctac ctgctggtgc ctgagaaggt 781 caaggacgcc tacctggtcc acctgatcca gcgcttccag gatgagcacg aggactggtc 841 cattatcatc ttcaccaaca cgtgcaagac ctgccagatt ctgtgcatga tgctgcgcaa 901 attcagcttc cccaccgtgg ctctgcactc catgatgaag cagaaagaac gctttgccgc 961 cctagccaag ttcaagtcca gcatctaccg gatcctgatc gcaacagacg tggcctcccg 1021 tggagctgac cagccacctc tgcctccagg ggcctggaca tccctacggt acaggtggtc 1081 atcaaccaca acacccccgg gctccccaag atctacatcc accgagtcgg ccggacggcc 1141 cgtgcagggc ggcagggtca ggccatcacg ctggtgacac agtacgacat ccacctggtg 1201 cacgccatcg aggagcagat caagaagaag ctggaggagt tctccgtgga agaggccgag 1261 gtgctacaga tcctcacaca ggtcaacgtg gtgcgaagag agtgtgagat caaactggag 1321 gcggcccact ttgacgaaaa gaaggagatc aacaaacgga agcagctgat cctggagggg 1381 aaggaccctg acctggaggc caagcgcaag gctgagctgg ccaagatcaa gcagaagaac 1441 cggcgcttca aggagaaggt ggaggagacg ctgaagcgac agaaggctgg cagggctggc 1501 cacaaggggc gtccacccag gacaccgtct gggtcccact caggcccagt cccctcccag 1561 ggcctggtct gagccccaca cggccatctg cccagtcctt gactcgtcca tggagctgag 1621 ggtcggagga accttccttg ggggcagcag cccttcccgg gggcctaccc agtgccccac 1681 agcagaaccc gtgggcgctc gtgttgtgcg ggccctgctc ctctgccccg aaaccactgg 1741 ctggtccctt ccctgagccc tggccaagat tcaggctgca ggggaagaaa gaacatgacc 1801 gggaggttgt gaccccaacc caaggtcacc ccccaggggt gccgcataca ggaggtgctt 1861 aataaacggg tcttttgact tcaaaaaaaa aaaaaaaa //