LOCUS BC000979 1898 bp mRNA linear HUM 04-OCT-2003
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 49, mRNA (cDNA
clone MGC:5278 IMAGE:2901163), complete cds.
ACCESSION BC000979
VERSION BC000979.3
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1898)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1898)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 25, 2003 this sequence version replaced BC000979.2.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: d Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 9506608.
FEATURES Location/Qualifiers
source 1..1898
/db_xref="H-InvDB:HIT000030041"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5278 IMAGE:2901163"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1898
/gene="DDX49"
/gene_synonym="FLJ10432"
/gene_synonym="R27090_2"
/db_xref="GeneID:54555"
CDS 413..1177
/gene="DDX49"
/gene_synonym="FLJ10432"
/gene_synonym="R27090_2"
/codon_start=1
/product="DDX49 protein"
/protein_id="AAH00979.2"
/db_xref="GeneID:54555"
/translation="MDMVAQALELSRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVM
DEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEA
QAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMM
LRKFSFPTVALHSMMKQKERFAALAKFKSSIYRILIATDVASRGADQPPLPPGAWTSL
RYRWSSTTTPPGSPRSTSTESAGRPVQGGRVRPSRW"
misc_feature 413..1036
/gene="DDX49"
/gene_synonym="FLJ10432"
/gene_synonym="R27090_2"
/note="SrmB; Region: Superfamily II DNA and RNA helicases
[DNA replication, recombination, and repair /
Transcription / Translation, ribosomal structure and
biogenesis]"
/db_xref="CDD:COG0513"
BASE COUNT 421 a 586 c 570 g 321 t
ORIGIN
1 caagcggcca caaggatggc aggcttcgcg gagctcgggc tgtcatcgtg gctcgtggaa
61 caatgtcggc agctgggttt gaagcagccc acgcccgtgc agctcggctg catccccgcc
121 atcctggagg gtcgagactg cttgggctgt gctaagacag gcagtgggaa gacagcagcg
181 tttgtccttc ccatcttgca gaagctgtct gaggatccct atggcatctt ctgcctcgtc
241 ctgacaccca ccaggggtcc tgcagaatta aacaagatgg ccccggtgca gtggctcaca
301 cctgtaatcc cagcactttg ggagctccag ggagctggcc taccagatcg cagagcagtt
361 ccgggtcctg gggaagcctc tagggctgaa agactgcatc atcgtcggtg gcatggacat
421 ggtggcccag gcgctggagc tctctcggaa accacacgtg gtcatcgcca cgccggggcg
481 cctggcagat cacctgcgca gctccaacac ttttagtata aagaagatcc gcttcctggt
541 gatggatgag gcagaccggc tgctggaaca gggctgcact gacttcaccg tggacctgga
601 ggccatcctg gcggctgtgc cggcccgcag gcagacactg ctgttcagcg ccacgctgac
661 cgacacactc cgggagctgc agggtctggc caccaaccag cccttcttct gggaagcaca
721 ggccccggtg agcaccgtgg agcagctgga ccagcgctac ctgctggtgc ctgagaaggt
781 caaggacgcc tacctggtcc acctgatcca gcgcttccag gatgagcacg aggactggtc
841 cattatcatc ttcaccaaca cgtgcaagac ctgccagatt ctgtgcatga tgctgcgcaa
901 attcagcttc cccaccgtgg ctctgcactc catgatgaag cagaaagaac gctttgccgc
961 cctagccaag ttcaagtcca gcatctaccg gatcctgatc gcaacagacg tggcctcccg
1021 tggagctgac cagccacctc tgcctccagg ggcctggaca tccctacggt acaggtggtc
1081 atcaaccaca acacccccgg gctccccaag atctacatcc accgagtcgg ccggacggcc
1141 cgtgcagggc ggcagggtca ggccatcacg ctggtgacac agtacgacat ccacctggtg
1201 cacgccatcg aggagcagat caagaagaag ctggaggagt tctccgtgga agaggccgag
1261 gtgctacaga tcctcacaca ggtcaacgtg gtgcgaagag agtgtgagat caaactggag
1321 gcggcccact ttgacgaaaa gaaggagatc aacaaacgga agcagctgat cctggagggg
1381 aaggaccctg acctggaggc caagcgcaag gctgagctgg ccaagatcaa gcagaagaac
1441 cggcgcttca aggagaaggt ggaggagacg ctgaagcgac agaaggctgg cagggctggc
1501 cacaaggggc gtccacccag gacaccgtct gggtcccact caggcccagt cccctcccag
1561 ggcctggtct gagccccaca cggccatctg cccagtcctt gactcgtcca tggagctgag
1621 ggtcggagga accttccttg ggggcagcag cccttcccgg gggcctaccc agtgccccac
1681 agcagaaccc gtgggcgctc gtgttgtgcg ggccctgctc ctctgccccg aaaccactgg
1741 ctggtccctt ccctgagccc tggccaagat tcaggctgca ggggaagaaa gaacatgacc
1801 gggaggttgt gaccccaacc caaggtcacc ccccaggggt gccgcataca ggaggtgctt
1861 aataaacggg tcttttgact tcaaaaaaaa aaaaaaaa
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