LOCUS BC000938 1793 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens X-box binding protein 1, mRNA (cDNA clone MGC:5436 IMAGE:3449394), complete cds. ACCESSION BC000938 VERSION BC000938.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1793) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1793) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 3 Row: f Column: 8 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis. FEATURES Location/Qualifiers source 1..1793 /db_xref="H-InvDB:HIT000030017" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:5436 IMAGE:3449394" /tissue_type="Placenta, choriocarcinoma" /clone_lib="NIH_MGC_10" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1793 /gene="XBP1" /gene_synonym="TREB5" /db_xref="GeneID:7494" /db_xref="HGNC:HGNC:12801" /db_xref="MIM:194355" CDS 6..791 /gene="XBP1" /gene_synonym="TREB5" /codon_start=1 /product="X-box binding protein 1" /protein_id="AAH00938.1" /db_xref="GeneID:7494" /db_xref="HGNC:HGNC:12801" /db_xref="MIM:194355" /translation="MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQR GASPEAASGGLPQARKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQV VDLEEENQKLLLENQLLREKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAG SAESAALRLRAPLQQVQAQLSPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSN ALPQSLPAWRSSQRSTQKDPVPYQPPFLCQWGRHQPSWKPLMN" BASE COUNT 470 a 437 c 434 g 452 t ORIGIN 1 gagctatggt ggtggtggca gccgcgccga acccggccga cgggacccct aaagttctgc 61 ttctgtcggg gcagcccgcc tccgccgccg gagccccggc cggccaggcc ctgccgctca 121 tggtgccagc ccagagaggg gccagcccgg aggcagcgag cggggggctg ccccaggcgc 181 gcaagcgaca gcgcctcacg cacctgagcc ccgaggagaa ggcgctgagg aggaaactga 241 aaaacagagt agcagctcag actgccagag atcgaaagaa ggctcgaatg agtgagctgg 301 aacagcaagt ggtagattta gaagaagaga accaaaaact tttgctagaa aatcagcttt 361 tacgagagaa aactcatggc cttgtagttg agaaccagga gttaagacag cgcttgggga 421 tggatgccct ggttgctgaa gaggaggcgg aagccaaggg gaatgaagtg aggccagtgg 481 ccgggtctgc tgagtccgca gcactcagac tacgtgcacc tctgcagcag gtgcaggccc 541 agttgtcacc cctccagaac atctccccat ggattctggc ggtattgact cttcagattc 601 agagtctgat atcctgttgg gcattctgga caacttggac ccagtcatgt tcttcaaatg 661 cccttcccca gagcctgcca gcctggagga gctcccagag gtctacccag aaggacccag 721 ttccttacca gcctcccttt ctctgtcagt ggggacgtca tcagccaagc tggaagccat 781 taatgaacta attcgttttg accacatata taccaagccc ctagtcttag agataccctc 841 tgagacagag agccaagcta atgtggtagt gaaaatcgag gaagcacctc tcagcccctc 901 agagaatgat caccctgaat tcattgtctc agtgaaggaa gaacctgtag aagatgacct 961 cgttccggag ctgggtatct caaatctgct ttcatccagc cactgcccaa agccatcttc 1021 ctgcctactg gatgcttaca gtgactgtgg atacgggggt tccctttccc cattcagtga 1081 catgtcctct ctgcttggtg taaaccattc ttgggaggac acttttgcca atgaactctt 1141 tccccagctg attagtgtct aaggaatgat ccaatactgt tgcccttttc cttgactatt 1201 acactgcctg gaggatagca gagaagcctg tctgtacttc attcaaaaag ccaaaataga 1261 gagtatacag tcctagagaa ttcctctatt tgttcagatc tcatagatga cccccaggta 1321 ttgtcttttg acatccagca gtccaaggta ttgagacata ttactggaag taagaaatat 1381 tactataatt gagaactaca gcttttaaga ttgtactttt atcttaaaag ggtggtagtt 1441 ttccctaaaa tacttattat gtaagggtca ttagacaaat gtcttgaagt agacatggaa 1501 tttatgaatg gttctttatc atttctcttc cccctttttg gcatcctggc ttgcctccag 1561 ttttaggtcc tttagtttgc ttctgtaagc aacgggaaca cctgctgagg gggctctttc 1621 cctcatgtat acttcaagta agatcaagaa tcttttgtga aattatagaa atttactatg 1681 taaatgcttg atggaatttt ttcctgctag tgtagcttct gaaaggtgct ttctccattt 1741 atttaaaact acccatgcaa ttaaaaggta caatgcagca aaaaaaaaaa aaa //