LOCUS BC000908 1442 bp mRNA linear HUM 09-JUN-2008
DEFINITION Homo sapiens survival of motor neuron 2, centromeric, mRNA (cDNA
clone MGC:5208 IMAGE:2985046), complete cds.
ACCESSION BC000908
VERSION BC000908.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1442)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1442)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (16-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Feb 23, 2001 this sequence version replaced BC000908.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: p Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13259515.
FEATURES Location/Qualifiers
source 1..1442
/db_xref="H-InvDB:HIT000029996_05"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5208 IMAGE:2985046"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_10"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1442
/gene="SMN2"
/gene_synonym="BCD541"
/gene_synonym="C-BCD541"
/gene_synonym="SMNC"
/db_xref="GeneID:6607"
/db_xref="HGNC:HGNC:11118"
/db_xref="MIM:601627"
CDS 33..881
/gene="SMN2"
/gene_synonym="BCD541"
/gene_synonym="C-BCD541"
/gene_synonym="SMNC"
/codon_start=1
/product="SMN2 protein"
/protein_id="AAH00908.1"
/db_xref="GeneID:6607"
/db_xref="HGNC:HGNC:11118"
/db_xref="MIM:601627"
/translation="MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYD
KAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIW
SEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQENE
NESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPP
PPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALGSMLISWYMSGYHTGY
YMEMLA"
BASE COUNT 454 a 274 c 324 g 390 t
ORIGIN
1 ggggccccac gctgcgcacc cgcgggtttg ctatggcgat gagcagcggc ggcagtggtg
61 gcggcgtccc ggagcaggag gattccgtgc tgttccggcg cggcacaggc cagagcgatg
121 attctgacat ttgggatgat acagcactga taaaagcata tgataaagct gtggcttcat
181 ttaagcatgc tctaaagaat ggtgacattt gtgaaacttc gggtaaacca aaaaccacac
241 ctaaaagaaa acctgctaag aagaataaaa gccaaaagaa gaatactgca gcttccttac
301 aacagtggaa agttggggac aaatgttctg ccatttggtc agaagacggt tgcatttacc
361 cagctaccat tgcttcaatt gattttaaga gagaaacctg tgttgtggtt tacactggat
421 atggaaatag agaggagcaa aatctgtccg atctactttc cccaatctgt gaagtagcta
481 ataatataga acagaatgct caagagaatg aaaatgaaag ccaagtttca acagatgaaa
541 gtgagaactc caggtctcct ggaaataaat cagataacat caagcccaaa tctgctccat
601 ggaactcttt tctccctcca ccacccccca tgccagggcc aagactggga ccaggaaagc
661 caggtctaaa attcaatggc ccaccaccgc caccgccacc accaccaccc cacttactat
721 catgctggct gcctccattt ccttctggac caccaataat tcccccacca cctcccatat
781 gtccagattc tcttgatgat gctgatgctt tgggaagtat gttaatttca tggtacatga
841 gtggctatca tactggctat tatatggaaa tgctggcata gagcagcact aaatgacacc
901 actaaagaaa cgatcagaca gatctggaat gtgaagcgtt atagaagata actggcctca
961 tttcttcaaa atatcaagtg ttgggaaaga aaaaaggaag tggaatgggt aactcttctt
1021 gattaaaagt tatgtaataa ccaaatgcaa tgtgaaatat tttactggac tctattttga
1081 aaaaccatct gtaaaagact gaggtggggg tgggaggcca gcacggtggt gaggcagttg
1141 agaaaatttg aatgtggatt agattttgaa tgatattgga taattattgg taattttatg
1201 agctgtgaga agggtgttgt agtttataaa agactgtctt aatttgcata cttaagcatt
1261 taggaatgaa gtgttagagt gtcttaaaat gtttcaaatg gtttaacaaa atgtatgtga
1321 ggcgtatgtg gcaaaatgtt acagaatcta actggtggac atggctgttc attgtactgt
1381 ttttttctat cttctatatg tttaaaagta tataataaaa atatttaatt tttttttaaa
1441 aa
//