LOCUS BC000715 927 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens C-type lectin domain family 4, member E, mRNA (cDNA
clone MGC:1246 IMAGE:3507103), complete cds.
ACCESSION BC000715
VERSION BC000715.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 927)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 927)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000715.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: i Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7657332.
FEATURES Location/Qualifiers
source 1..927
/db_xref="H-InvDB:HIT000029860"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1246 IMAGE:3507103"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..927
/gene="CLEC4E"
/gene_synonym="MINCLE"
/db_xref="GeneID:26253"
/db_xref="HGNC:HGNC:14555"
/db_xref="MIM:609962"
CDS 84..743
/gene="CLEC4E"
/gene_synonym="MINCLE"
/codon_start=1
/product="C-type lectin domain family 4, member E"
/protein_id="AAH00715.1"
/db_xref="GeneID:26253"
/db_xref="HGNC:HGNC:14555"
/db_xref="MIM:609962"
/translation="MNSSKSSETQCTERGCFSSQMFLWTVAGIPILFLSACFITRCVV
TFRIFQTCDEKKFQLPENFTELSCYNYGSGSVKNCCPLNWEYFQSSCYFFSTDTISWA
LSLKNCSAMGAHLVVINSQEEQEFLSYKKPKMREFFIGLSDQVVEGQWQWVDGTPLTK
SLSFWDVGEPNNIATLEDCATMRDSSNPRQNWNDVTCFLNYFRICEMVGINPLNKGKS
L"
BASE COUNT 317 a 179 c 198 g 233 t
ORIGIN
1 caaaacactc ctgaggagaa agaaagagag ggagggagag aaaaagagag agagagaaac
61 aaaaaaccaa agagagagaa aaaatgaatt catctaaatc atctgaaaca caatgcacag
121 agagaggatg cttctcttcc caaatgttct tatggactgt tgctgggatc cccatcctat
181 ttctcagtgc ctgtttcatc accagatgtg ttgtgacatt tcgcatcttt caaacctgtg
241 atgagaaaaa gtttcagcta cctgagaatt tcacagagct ctcctgctac aattatggat
301 caggttcagt caagaattgt tgtccattga actgggaata ttttcaatcc agctgctact
361 tcttttctac tgacaccatt tcctgggcgt taagtttaaa gaactgctca gccatggggg
421 ctcacctggt ggttatcaac tcacaggagg agcaggaatt cctttcctac aagaaaccta
481 aaatgagaga gttttttatt ggactgtcag accaggttgt cgagggtcag tggcaatggg
541 tggacggcac acctttgaca aagtctctga gcttctggga tgtaggggag cccaacaaca
601 tagctaccct ggaggactgt gccaccatga gagactcttc aaacccaagg caaaattgga
661 atgatgtaac ctgtttcctc aattattttc ggatttgtga aatggtagga ataaatcctt
721 tgaacaaagg aaaatctctt taagaacaga aggcacaact caaatgtgta aagaaggaag
781 agcaagaaca tggccacacc caccgcccca cacgagaaat ttgtgcgctg aacttcaaag
841 gacttcataa gtatttgtta ctctgatata aataaaaata agtagtttta aatgttataa
901 ttcatgaaaa aaaaaaaaaa aaaaaaa
//