LOCUS BC000714 2290 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens cleavage and polyadenylation specific factor 6, 68kDa,
mRNA (cDNA clone MGC:1242 IMAGE:3506481), complete cds.
ACCESSION BC000714
VERSION BC000714.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2290)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2290)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC000714.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: c Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 5901927.
FEATURES Location/Qualifiers
source 1..2290
/db_xref="H-InvDB:HIT000029859"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1242 IMAGE:3506481"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2290
/gene="CPSF6"
/gene_synonym="CFIM"
/gene_synonym="CFIM68"
/gene_synonym="HPBRII-4"
/gene_synonym="HPBRII-7"
/db_xref="GeneID:11052"
/db_xref="MIM:604979"
CDS 32..1798
/gene="CPSF6"
/gene_synonym="CFIM"
/gene_synonym="CFIM68"
/gene_synonym="HPBRII-4"
/gene_synonym="HPBRII-7"
/codon_start=1
/product="CPSF6 protein"
/protein_id="AAH00714.1"
/db_xref="GeneID:11052"
/db_xref="MIM:604979"
/translation="MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNG
DAPEDRDYMDTLPPTVGDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVH
SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCN
KQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFP
GPAGPGGPPPPFPGNLIKHLVKGTRPLFLETRIPWHMGHSIEEIPIFGLKAGQTPPRP
PLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPP
PPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAP
HVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREMDTARTPLSEAE
FEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLIS
SLQDCLHGIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERE
RHRDRDRDRDRERDREREYRHR"
misc_feature 278..499
/gene="CPSF6"
/gene_synonym="CFIM"
/gene_synonym="CFIM68"
/gene_synonym="HPBRII-4"
/gene_synonym="HPBRII-7"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 680 a 513 c 529 g 568 t
ORIGIN
1 cggcggcggc ggcggccgag gctgaaggaa gatggcggac ggcgtggacc acatagacat
61 ttacgcggat gtcggcgaag agttcaacca ggaagctgaa tatggtgggc atgatcagat
121 agatttgtat gacgatgtca tatctccatc tgcaaataat ggagatgccc cagaagaccg
181 agattacatg gatactctcc caccaactgt tggtgatgat gtgggtaaag gagcagcacc
241 aaatgttgtc tatacatata ctggaaagag aattgcatta tatattggaa atctaacatg
301 gtggacaaca gatgaagact taactgaagc agttcattct ttgggagtaa atgatatttt
361 ggagataaaa ttttttgaaa atcgggcaaa tggccagtca aaggggtttg cccttgttgg
421 tgttggatct gaagcatctt caaaaaagtt aatggatctg ttacctaaaa gagaacttca
481 tggtcagaat cctgttgtaa ctccatgcaa taaacagttc ctgagtcaat ttgaaatgca
541 gtccaggaaa actacacaat caggacaaat gtctggggaa ggtaaagctg gtcctccagg
601 aggcagttcc cgtgcagcat ttccacaagg tggtagagga cggggccgtt ttccaggggc
661 tgttcctggt ggggacagat ttcctgggcc agcaggacca ggagggccac ccccaccttt
721 tccaggaaat ttgatcaagc atcttgttaa aggaactcgg cctttgttcc tggaaactag
781 gattccatgg catatggggc acagcataga ggaaataccc atttttggcc taaaagctgg
841 acagactcca ccacgtccac ccttaggtcc tccaggccca cctggtccac caggtcctcc
901 acctcctggt caggttctgc ctcctcctct agctgggcct cctaatcgag gagatcgccc
961 tccaccacca gttctttttc ctggacaacc ttttgggcag cctccattgg gtccacttcc
1021 tcctggccct ccacctccag ttccaggcta cggcccccct cctggcccac cacctccaca
1081 acagggacca cctccacctc caggcccctt tccacctcgt ccacccggtc cacttgggcc
1141 accccttaca ctagctcctc ctccgcatct tcctggacca cctccaggtg ccccaccgcc
1201 agctccgcat gtgaacccag ctttctttcc tccaccaact aacagtggca tgcctacatc
1261 agatagccga ggtccaccac caacagatcc atatgggcga cctccaccat atgatagggg
1321 tgactatggc ccccctggaa gggaaatgga tactgcaaga acgccattga gtgaagctga
1381 atttgaagaa atcatgaata gaaatagggc aatctcaagc agtgctattt cgagagctgt
1441 gtctgatgcc agtgctggtg attatgggag tgctattgag acactggtaa ctgcaatttc
1501 tttaattaaa caatccaaag tatctgctga tgatcgttgc aaagttctta ttagttcttt
1561 gcaagattgc cttcatggaa ttgagtccaa gtcttatggt tctggatcaa gacgtgaacg
1621 atcaagagag agggaccata gtagatcacg agaaaagagt cgacgtcata aatcccgtag
1681 tagagaccgt catgacgatt attacagaga gagaagcaga gaacgagaga ggcaccggga
1741 tcgtgaccga gaccgtgacc gagagcgtga ccgagagcgc gaatatcgtc atcgttagaa
1801 gctgaaggaa gaggatcacc ttccaagaca aaacagtctt catgggggaa aaatgacgct
1861 tgtccagcag tttgcttctt gtgattgaac tgaacctgta aggattcatg gataaaatga
1921 acaggaatag atctgaataa agcaaatctg cataaatggt aaccagtagc tctactttta
1981 ttttttatgt tgcttaactg ttttatttga aggaaacctg tgtgatttaa aaagttatag
2041 cttttgcaac tttattactg gttatataca tttggccatt atgatgtgca agcaattgga
2101 aaaaaagtca agtaaatgct tgtttttgta gtagtttgtt cttgttaaaa atgtttatat
2161 gataatgtct gtaaacagca tcactttgat tacaatagat gtagtgttgt aataaactgt
2221 ttaatgggga aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2281 aaaaaaaaaa
//