LOCUS BC000708 1672 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DNA-damage-inducible transcript 4, mRNA (cDNA clone
MGC:1033 IMAGE:3507244), complete cds.
ACCESSION BC000708
VERSION BC000708.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1672)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1672)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: k Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56676369.
FEATURES Location/Qualifiers
source 1..1672
/db_xref="H-InvDB:HIT000258877"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:1033 IMAGE:3507244"
/tissue_type="Kidney, renal cell adenocarcinoma"
/clone_lib="NIH_MGC_14"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1672
/gene="DDIT4"
/gene_synonym="Dig2"
/gene_synonym="FLJ20500"
/gene_synonym="REDD-1"
/gene_synonym="REDD1"
/gene_synonym="RP11-442H21.1"
/gene_synonym="RTP801"
/db_xref="GeneID:54541"
/db_xref="HGNC:HGNC:24944"
/db_xref="MIM:607729"
CDS 109..807
/gene="DDIT4"
/gene_synonym="Dig2"
/gene_synonym="FLJ20500"
/gene_synonym="REDD-1"
/gene_synonym="REDD1"
/gene_synonym="RP11-442H21.1"
/gene_synonym="RTP801"
/codon_start=1
/product="DNA-damage-inducible transcript 4"
/protein_id="AAH00708.1"
/db_xref="GeneID:54541"
/db_xref="HGNC:HGNC:24944"
/db_xref="MIM:607729"
/translation="MPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFD
RSTSLESSDCESLDSSNSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQE
SLAQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSV
GQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIK
KKLYSSEQLLIEEC"
BASE COUNT 345 a 441 c 509 g 377 t
ORIGIN
1 ggcacgaggc gcacttgtct tagcagttct cgctgaccgc gctagctgcg gcttctacgc
61 tccggcactc tgagttcatc agcaaacgcc ctggcgtctg tcctcaccat gcctagcctt
121 tgggaccgct tctcgtcgtc gtccacctcc tcttcgccct cgtccttgcc ccgaactccc
181 accccagatc ggccgccgcg ctcagcctgg gggtcggcga cccgggagga ggggtttgac
241 cgctccacga gcctggagag ctcggactgc gagtccctgg acagcagcaa cagtggcttc
301 gggccggagg aagacacggc ttacctggat ggggtgtcgt tgcccgactt cgagctgctc
361 agtgaccctg aggatgaaca cttgtgtgcc aacctgatgc agctgctgca ggagagcctg
421 gcccaggcgc ggctgggctc tcgacgccct gcgcgcctgc tgatgcctag ccagttggta
481 agccaggtgg gcaaagaact actgcgcctg gcctacagcg agccgtgcgg cctgcggggg
541 gcgctgctgg acgtctgcgt ggagcagggc aagagctgcc acagcgtggg ccagctggca
601 ctcgacccca gcctggtgcc caccttccag ctgaccctcg tgctgcgcct ggactcacga
661 ctctggccca agatccaggg gctgtttagc tccgccaact ctcccttcct ccctggcttc
721 agccagtccc tgacgctgag cactggcttc cgagtcatca agaagaagct gtacagctcg
781 gaacagctgc tcattgagga gtgttgaact tcaacctgag ggggccgaca gtgccctcca
841 agacagagac gactgaactt ttggggtgga gactagaggc aggagctgag ggactgattc
901 cagtggttgg aaaactgagg cagccaccta aggtggaggt gggggaatag tgtttcccag
961 gaagctcatt gagttgtgtg cgggtggctg tgcattgggg acacataccc ctcagtactg
1021 tagcatgaaa caaaggctta ggggccaaca aggcttccag ctggatgtgt gtgtagcatg
1081 taccttatta tttttgttac tgacagttaa cagtggtgtg acatccagag agcagctggg
1141 ctgctcccgc cccagcctgg cccagggtga aggaagaggc acgtgctcct cagagcagcc
1201 ggagggaggg gggaggtcgg aggtcgtgga ggtggtttgt gtatcttact ggtctgaagg
1261 gaccaagtgt gtttgttgtt tgttttgtat cttgtttttc tgatcggagc atcactactg
1321 acctgttgta ggcagctatc ttacagacgc atgaatgtaa gagtaggaag gggtgggtgt
1381 cagggatcac ttgggatctt tgacacttga aaaattacac ctggcagctg cgtttaagcc
1441 ttcccccatc gtgtactgca gagttgagct ggcaggggag gggctgagag ggtgggggct
1501 ggaacccctc cccgggagga gtgccatctg ggtcttccat ctagaactgt ttacatgaag
1561 ataagatact cactgttcat gaatacactt gatgttcaag tattaagacc tatgcaatat
1621 tttttacttt tctaataaac atgtttgtta aaacaaaaaa aaaaaaaaaa aa
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