LOCUS BC000660 1549 bp mRNA linear HUM 04-OCT-2003 DEFINITION Homo sapiens interferon regulatory factor 3, mRNA (cDNA clone MGC:1716 IMAGE:3347928), complete cds. ACCESSION BC000660 VERSION BC000660.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1549) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1549) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Aug 19, 2003 this sequence version replaced BC000660.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 5 Row: d Column: 6 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 4504724. FEATURES Location/Qualifiers source 1..1549 /db_xref="H-InvDB:HIT000050388" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:1716 IMAGE:3347928" /tissue_type="Kidney, renal cell adenocarcinoma" /clone_lib="NIH_MGC_14" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1549 /gene="IRF3" /db_xref="GeneID:3661" /db_xref="MIM:603734" CDS 156..1514 /gene="IRF3" /codon_start=1 /product="IRF3 protein" /protein_id="AAH00660.1" /db_xref="GeneID:3661" /db_xref="MIM:603734" /translation="MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQ DAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDPHD PHKIYEFVNSGVGDFSQPDTSPDTNGGGSTSDTQEDILDELLGNMVLAPLPDPGPPSL AVAPEPCPQPLRSPSLDNPTPFPNLGPSENPLKRLLVPGEEWEFEVTAFYRGRQVFQQ TISCPEGLRLVGSEVGDRTLPGWPVTLPDPGMSLTDRGVMSYVRHVLSCLGGGLALWR AGQWLWAQRLGHCHTYWAVSEELLPNSGHGPDGEVPKDKEGGVFDLGPFIVGSWAPRS DYLHGRKRTLTTLCPLVLCGGVMAPGPAVDQEARDGQGCAHVPQGLGRNGPGRGCLLP GEYCGPAHFQQPPTLPHLRPVQGLPAGLGGGHGFPGPWGELSPRSSWCASNPPVPHHL NQ" misc_feature 156..488 /gene="IRF3" /note="IRF; Region: interferon regulatory factor" /db_xref="CDD:smart00348" BASE COUNT 326 a 470 c 480 g 273 t ORIGIN 1 tcaagaagtc gatcaaaaag aaagccccag cgctctagag ctcagctgac gggaaagggg 61 gtgcgcagcc tcgagtttga gagctacccg gagctccaag acaggggtgg gttccagctg 121 cccgcacgcc ccgaccttcc atcgtaggcc ggaccatggg aaccccaaag ccacggatcc 181 tgccctggct ggtgtcgcag ctggacctgg ggcaactgga gggcgtggcc tgggtgaaca 241 agagccgcac gcgcttccgc atcccttgga agcacggcct acggcaggat gcacagcagg 301 aggatttcgg aatcttccag gcctgggccg aggccactgg tgcatatgtt cccgggaggg 361 ataagccaga cctgccaacc tggaagagga atttccgctc tgccctcaac cgcaaagaag 421 ggttgcgttt agcagaggac cggagcaagg accctcacga cccacataaa atctacgagt 481 ttgtgaactc aggagttggg gacttttccc agccagacac ctctccggac accaatggtg 541 gaggcagtac ttctgatacc caggaagaca ttctggatga gttactgggt aacatggtgt 601 tggccccact cccagatccg ggacccccaa gcctggctgt agcccctgag ccctgccctc 661 agcccctgcg gagccccagc ttggacaatc ccactccctt cccaaacctg gggccctctg 721 agaacccact gaagcggctg ttggtgccgg gggaagagtg ggagttcgag gtgacagcct 781 tctaccgggg ccgccaagtc ttccagcaga ccatctcctg cccggagggc ctgcggctgg 841 tggggtccga agtgggagac aggacgctgc ctggatggcc agtcacactg ccagaccctg 901 gcatgtccct gacagacagg ggagtgatga gctacgtgag gcatgtgctg agctgcctgg 961 gtgggggact ggctctctgg cgggccgggc agtggctctg ggcccagcgg ctggggcact 1021 gccacacata ctgggcagtg agcgaggagc tgctccccaa cagcgggcat gggcctgatg 1081 gcgaggtccc caaggacaag gaaggaggcg tgtttgacct ggggcccttc attgtaggct 1141 cctgggcccc cagatctgat taccttcacg gaaggaagcg gacgctcacc acgctatgcc 1201 ctctggttct gtgtggggga gtcatggccc caggaccagc cgtggaccaa gaggctcgtg 1261 atggtcaagg ttgtgcccac gtgcctcagg gccttggtag aaatggcccg ggtagggggt 1321 gcctcctccc tggagaatac tgtggacctg cacatttcca acagccaccc actctccctc 1381 acctccgacc agtacaaggc ctacctgcag gacttggtgg agggcatgga tttccagggc 1441 cctggggaga gctgagccct cgctcctcat ggtgtgcctc caacccccct gttccccacc 1501 acctcaacca ataaactggt tcctgctatg aaaaaaaaaa aaaaaaaaa //