LOCUS BC000646 1709 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens LIM and cysteine-rich domains 1, mRNA (cDNA clone
MGC:794 IMAGE:3343074), complete cds.
ACCESSION BC000646
VERSION BC000646.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1709)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1709)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000646.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: j Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14277673.
FEATURES Location/Qualifiers
source 1..1709
/db_xref="H-InvDB:HIT000029802"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:794 IMAGE:3343074"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1709
/gene="LMCD1"
/db_xref="GeneID:29995"
/db_xref="HGNC:HGNC:6633"
/db_xref="MIM:604859"
CDS 103..1200
/gene="LMCD1"
/codon_start=1
/product="LIM and cysteine-rich domains 1"
/protein_id="AAH00646.1"
/db_xref="GeneID:29995"
/db_xref="HGNC:HGNC:6633"
/db_xref="MIM:604859"
/translation="MAKVAKDLNPGVKKMSLGQLQSARGVACLGCKGTCSGFEPHSWR
KICKSCKCSQEDHCLTSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMT
NPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAFYRRRQLMHQ
LPIYDQDPSRCRGLLENELKLMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKP
EGAETTAATTNGSLSDPSKEVEYVCELCKGAAPPDSPVVYSDRAGYNKQWHPTCFVCA
KCSEPLVDLIYFWKDGAPWCGRHYCESLRPRCSGCDEIIFAEDYQRVEDLAWHRKHFV
CEGCEQLLSGRAYIVTKGQLLCPTCSKSKRS"
BASE COUNT 434 a 442 c 476 g 357 t
ORIGIN
1 cccaggcccg cgaacttggc cattcagccg ccgctgtccc cgctgcgcgc cctcgcgcct
61 ctgcctgaga agccaggcgc tgttccccca ccccagaaga ggatggcaaa ggtggctaag
121 gacctcaacc caggagttaa aaagatgtcc ctgggccagc tgcagtcagc aagaggtgtg
181 gcatgtttgg gatgcaaggg gacgtgttcg ggcttcgagc cacattcatg gaggaaaata
241 tgcaagtctt gcaaatgcag ccaagaggac cactgcctaa catctgacct agaagacgat
301 cggaaaattg gccgcttgct gatggactcc aagtattcca ccctcactgc tcgggtgaaa
361 ggcggggacg gcatccggat ttacaagagg aaccggatga tcatgaccaa ccctattgct
421 actgggaaag atcccacttt tgacaccatc acctacgagt gggctccccc tggagtcacc
481 cagaaactgg gactgcagta catggagctc atccccaagg agaagcagcc agtgacaggc
541 acagagggtg ccttttaccg ccgccgccag ctcatgcacc agctccccat ctatgaccag
601 gatccctcgc gctgccgtgg acttttggag aatgagttga aactgatgga agaatttgtc
661 aagcaatata agagcgaggc cctcggcgtg ggagaagtgg ccctcccggg gcagggtggc
721 ttgcccaagg aggaggggaa gcagcaggaa aagccagagg gggcagagac cactgctgct
781 accaccaacg gcagtctcag tgacccgtcc aaagaagtgg aatacgtctg cgagctctgc
841 aagggagcgg cccctcctga cagccccgtg gtctactcgg acagggcagg ctacaacaag
901 cagtggcacc ccacctgctt tgtgtgtgcc aagtgctccg agccgctggt ggacctcatc
961 tacttctgga aggatggtgc accctggtgc ggccgccatt actgcgagag tctgcggccc
1021 cggtgctccg gctgcgatga gataatattc gctgaggact accagcgtgt ggaagatctg
1081 gcctggcacc gaaagcactt tgtctgtgag ggttgtgagc agctgctgag cggccgggcg
1141 tacatcgtca ccaagggtca gcttctgtgc ccaacttgca gcaagtccaa acgctcctga
1201 agggctgccc acccacagcc agaatccaca ggatcccacc gagaaggaga gccaggtgtg
1261 ccgagaccat cctaagggtc cgatgtgaca gcaagcaagt gaaataaaca atgatttgct
1321 tttcagtgag aatatatata tgagatatat atagatatat attctaggtt gggtggtggt
1381 agatccttga gggtcagtag tttcaaaacc aaaaatattc taagaagtct taggatggag
1441 ttccttttct ttctgttgtt gtttcccagc tacaaccaac taaagacaca aatggcgttc
1501 tgcaagggga ctctgggagg agttttccag aatgcaattc cgagtgagca aatcgcatag
1561 ctgtagaatg tgcgtgcttt tttgtggaca caggagctcc tccaggagca ggctgggatc
1621 ccaactatcg cttgttgcct ctttttcaag tggaatttga attttaaata aacaactttt
1681 tttggcatga taaaaaaaaa aaaaaaaaa
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