LOCUS BC000630 1330 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens proteasome (prosome, macropain) 26S subunit,
non-ATPase, 6, mRNA (cDNA clone MGC:809 IMAGE:3344973), complete
cds.
ACCESSION BC000630
VERSION BC000630.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1330)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1330)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: b Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 7661913.
FEATURES Location/Qualifiers
source 1..1330
/db_xref="H-InvDB:HIT000029788"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:809 IMAGE:3344973"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1330
/gene="PSMD6"
/gene_synonym="KIAA0107"
/gene_synonym="p44S10"
/gene_synonym="S10"
/gene_synonym="SGA-113M"
/db_xref="GeneID:9861"
/db_xref="HGNC:HGNC:9564"
CDS 18..1187
/gene="PSMD6"
/gene_synonym="KIAA0107"
/gene_synonym="p44S10"
/gene_synonym="S10"
/gene_synonym="SGA-113M"
/codon_start=1
/product="proteasome (prosome, macropain) 26S subunit,
non-ATPase, 6"
/protein_id="AAH00630.1"
/db_xref="GeneID:9861"
/db_xref="HGNC:HGNC:9564"
/translation="MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDAAVRDELMAA
VRDNNMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRD
AMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRN
TEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKT
FVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLA
VVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQEL
SRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM"
BASE COUNT 421 a 261 c 313 g 335 t
ORIGIN
1 ctgtcccctt cgccgcgatg ccgctggaga acctggagga ggagggtctg cccaagaacc
61 ccgacttgcg tatcgcgcag ctgcgcttcc tgctcagcct gcccgagcac cgcggagacg
121 ctgccgtgcg cgacgagctg atggcggccg tccgcgataa caacatggct ccttactatg
181 aagccttgtg caaatccctc gactggcaga tagacgtgga cctactcaat aaaatgaaga
241 aggcaaatga agatgagttg aagcgtttgg atgaggagct ggaagatgca gagaagaatc
301 taggagagag cgaaattcgc gatgcaatga tggcaaaggc cgagtacctc tgccggatag
361 gtgacaaaga gggagctctg acagcctttc gcaagacata tgacaaaact gtggccctgg
421 gtcaccgatt ggatattgta ttctatctcc ttaggattgg cttattttat atggataatg
481 atctcatcac acgaaacaca gaaaaggcca aaagcttaat agaagaagga ggagactggg
541 acaggagaaa ccgcctaaaa gtgtatcagg gtctttattg tgtggctatt cgtgatttca
601 aacaggcagc tgaactcttc cttgacactg tttcaacatt tacatcctat gaactcatgg
661 attataaaac atttgtgact tatactgtct atgtcagtat gattgcctta gaaagaccag
721 atctcaggga aaaggtcatt aaaggagcag agattcttga agtgttgcac agtcttccag
781 cagttcggca gtatctgttt tcactctatg aatgccgtta ctctgttttc ttccaatcat
841 tagcggttgt ggaacaggaa atgaaaaagg actggctttt tgcccctcat tatcgatact
901 atgtaagaga aatgagaatt catgcataca gtcagctgct ggaatcatat aggtcattaa
961 cccttggcta tatggcagaa gcgtttggtg ttggtgtgga attcattgat caggaactgt
1021 ccaggtttat tgctgccggg agactacact gcaaaataga taaagtgaat gaaatagtag
1081 aaaccaacag acctgatagc aagaactggc agtaccaaga aactatcaag aaaggagatc
1141 tgctactaaa cagagttcaa aaactttcca gagtaattaa tatgtaaagc catgtaacta
1201 acaaaggatt tgctttagag ataattattt ggaattttta tagcttactt cacaatgtgc
1261 ccaggtcagc tgtataaaat aaatactgca ttgttgtttc aaaaaaaaaa aaaaaaaaaa
1321 aaaaaaaaaa
//