LOCUS BC000565 1976 bp mRNA linear HUM 16-SEP-2003
DEFINITION Homo sapiens suppressor of Ty 16 homolog (S. cerevisiae), mRNA
(cDNA clone IMAGE:3163486), partial cds.
ACCESSION BC000565
VERSION BC000565.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1976)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1976)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000565.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: i Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19924176.
FEATURES Location/Qualifiers
source 1..1976
/db_xref="H-InvDB:HIT000085843"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3163486"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..>1976
/gene="SUPT16H"
/gene_synonym="CDC68"
/gene_synonym="FACT"
/gene_synonym="FACTP140"
/gene_synonym="FLJ10857"
/gene_synonym="FLJ14010"
/gene_synonym="SPT16/CDC68"
/db_xref="GeneID:11198"
/db_xref="MIM:605012"
CDS 77..>1976
/gene="SUPT16H"
/gene_synonym="CDC68"
/gene_synonym="FACT"
/gene_synonym="FACTP140"
/gene_synonym="FLJ10857"
/gene_synonym="FLJ14010"
/gene_synonym="SPT16/CDC68"
/codon_start=1
/product="SUPT16H protein"
/protein_id="AAH00565.1"
/db_xref="GeneID:11198"
/db_xref="MIM:605012"
/translation="MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEI
VYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPA
ITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFD
KIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLA
ESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMG
IRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVK
KQKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGK
KPEEKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDL
LGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKS
NVSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYT
YLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNIKAPGEQTVPALNLQNAFRI
IKEVQKRYK"
misc_feature 89..1888
/gene="SUPT16H"
/gene_synonym="CDC68"
/gene_synonym="FACT"
/gene_synonym="FACTP140"
/gene_synonym="FLJ10857"
/gene_synonym="FLJ14010"
/gene_synonym="SPT16/CDC68"
/note="COG5406; Region: Nucleosome binding factor SPN,
SPT16 subunit [Transcription / DNA replication,
recombination, and repair / Chromatin structure and
dynamics]"
/db_xref="CDD:COG5406"
BASE COUNT 663 a 361 c 492 g 460 t
ORIGIN
1 cctgggccga gagcgggtgg ctgagccggg acctcgcgtg attctcggaa cccgaggaga
61 agcggcgtcc ggggctatgg ctgtgactct ggacaaagac gcttattatc ggcgagtgaa
121 gagactgtac agcaattggc ggaaaggaga agatgagtat gccaacgttg atgccattgt
181 tgtatcagtg ggtgttgatg aagaaattgt ttatgccaaa tcaactgcct tacagacatg
241 gctctttggt tatgaactaa ctgatactat catggtcttt tgtgatgaca aaatcatctt
301 tatggccagc aagaaaaaag tggagttctt gaaacagatt gccaacacta agggcaatga
361 gaatgctaat ggagcccctg ccatcacact gctaatacga gaaaagaatg aaagtaataa
421 gagtagcttt gacaaaatga ttgaagccat taaagaaagc aagaatggca agaagattgg
481 agtgttcagc aaagacaaat tccctggaga gttcatgaag agctggaatg actgcctcaa
541 caaagaaggc tttgacaaaa tagatatcag tgcagttgtg gcatatacca tcgctgtaaa
601 ggaggatggg gagctcaacc taatgaagaa agcagccagc atcacttctg aagtcttcaa
661 caaattcttc aaggaaagag tcatggaaat agttgatgca gatgagaaag ttcgacacag
721 caaactggct gagtctgtgg aaaaggccat tgaagagaaa aaataccttg ctggggcaga
781 cccttctact gtggaaatgt gttaccctcc tatcattcag agtggtggca actataatct
841 caagttcagt gtggtgagtg acaagaatca tatgcacttt ggggctatca cttgtgccat
901 gggtattcgc ttcaagtctt actgctccaa ccttgttcgc actttgatgg ttgatccttc
961 tcaagaagtt caagaaaatt ataacttttt gctccagctt caagaggagc tgctgaagga
1021 attaagacat ggtgtgaaga tatgtgacgt gtataacgct gtcatggacg tggttaaaaa
1081 gcagaagcca gaactgctga acaaaattac caaaaaccta gggtttggga tgggaattga
1141 attccgtgaa ggctccctag taatcaatag caaaaatcaa tacaaactga agaaaggaat
1201 ggttttcagc atcaatttag gattctcaga cctgactaac aaggagggga aaaagccaga
1261 agagaaaacc tatgccctgt tcattggtga cacagtgctt gtggatgagg atggcccagc
1321 tactgttctc acttctgtga agaagaaagt gaagaatgtg gggattttcc taaagaatga
1381 agatgaggaa gaagaggagg aggagaaaga tgaggcagag gaccttttgg gaagaggttc
1441 tcgggcagca ttacttacag aaagaacaag aaatgaaatg actgcagaag agaagcgaag
1501 agcacatcag aaagaactag cggctcaact caatgaagaa gcaaagaggc gattgactga
1561 acaaaaggga gaacagcaga ttcagaaagc tcgcaagtct aatgtgtcct ataaaaaccc
1621 atctctgatg cctaaggaac cgcatattcg ggaaatgaag atctacatcg ataagaaata
1681 tgagactgta ataatgcccg tgtttggcat tgcaacaccg tttcacattg ccacaatcaa
1741 gaatataagt atgtccgtgg aaggagatta tacttacttg cgaatcaact tttattgccc
1801 aggcagtgct ctgggcagga atgaaggcaa catctttcct aaccctgaag cgacttttgt
1861 caaggaaatt acataccgag catcaaatat taaggcaccc ggagaacaga cagtaccagc
1921 cttgaacctt cagaatgctt tccgaattat taaagaagta cagaaacgtt ataaaa
//