LOCUS BC000563 1402 bp mRNA linear HUM 04-NOV-2003
DEFINITION Homo sapiens solute carrier family 6 (neurotransmitter transporter,
noradrenalin), member 2, mRNA (cDNA clone IMAGE:3162672), partial
cds.
ACCESSION BC000563
VERSION BC000563.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1402)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1402)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Oct 28, 2003 this sequence version replaced BC000563.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 5 Row: i Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..1402
/db_xref="H-InvDB:HIT000085842"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3162672"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_19"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1402
/gene="SLC6A2"
/gene_synonym="NAT1"
/gene_synonym="NET"
/gene_synonym="NET1"
/gene_synonym="SLC6A5"
/db_xref="GeneID:6530"
/db_xref="MIM:163970"
CDS <1..979
/gene="SLC6A2"
/gene_synonym="NAT1"
/gene_synonym="NET"
/gene_synonym="NET1"
/gene_synonym="SLC6A5"
/codon_start=2
/product="SLC6A2 protein"
/protein_id="AAH00563.2"
/db_xref="GeneID:6530"
/db_xref="MIM:163970"
/translation="LYFSLWKGVKTSGKVWIDAATQIFFSLGAGFGVLIAFASYNKFD
NNCYRDALLTSSINCITSFVSGFAIFSILGYMAHEHKVNIEDVATEGAGLVFILYPEA
ISTLSGSTFWAVVFFVMLLALGLDSSMGGMEAVITGLADDFQVLKRHRKLFTFGVTFS
TFLLALFCITKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSNDIQQMMG
FRPGLYWRLCWKFVSPAFLLFVVVVSIINFKPLTYDDYIFPPWANWVGWGIALSSMVL
VPIYVIYKFLSTQGSLWERLAYGITPENEHHLVAQRDIRQFQLQHWLAI"
misc_feature 2..907
/gene="SLC6A2"
/gene_synonym="NAT1"
/gene_synonym="NET"
/gene_synonym="NET1"
/gene_synonym="SLC6A5"
/note="SNF; Region: Sodium:neurotransmitter symporter
family"
/db_xref="CDD:pfam00209"
BASE COUNT 302 a 376 c 351 g 373 t
ORIGIN
1 cttgtatttt agcctctgga aaggggtgaa gacatcagga aaggtatgga ttgatgccgc
61 aactcagata tttttttcct tgggggctgg atttggagta ttgattgcat ttgccagtta
121 caacaaattt gacaacaact gttacaggga tgccctgctg accagcagca tcaactgtat
181 caccagcttc gtctctgggt tcgccatctt ctccatcctt ggttacatgg cccatgaaca
241 caaggtcaac attgaggatg tggccacaga aggagctggc ctagtgttca tcctgtatcc
301 agaggccatt tctaccctgt ctggatctac attctgggct gttgtgtttt tcgtcatgct
361 cctggcgctg ggccttgaca gctcaatggg aggcatggag gctgtcatca caggcctggc
421 agatgacttc caggtcctga agcgacaccg gaaactcttc acatttggcg tcaccttcag
481 cactttcctt ctcgccctgt tctgcataac caagggtgga atttacgtct tgaccctcct
541 ggacaccttt gctgcgggca cctccatcct ttttgctgtc ctcatggaag ccatcggagt
601 ttcctggttt tatggagtgg acaggttcag caacgacatc cagcagatga tggggttcag
661 gccgggtcta tactggagac tgtgctggaa gttcgtcagt cctgccttcc tcctgttcgt
721 ggttgtggtc agcatcatca acttcaagcc actcacctac gacgactaca tcttcccgcc
781 ctgggccaac tgggtggggt ggggcatcgc cctgtcctcc atggtcctgg tgcccatcta
841 cgtcatctat aagttcctca gcacgcaggg ctctctttgg gagagactgg cctatggcat
901 cacgccagag aacgagcacc acctggtggc tcagagggac atcagacagt tccagttgca
961 acactggctg gccatctgag cctgcctgga ggagaaggag gaacccccat gccaatgtcc
1021 aggtcacagg catccgctgc gctcccacct cggacaccat cttgggattc ctcccctgga
1081 agttgtcctt tctgatcctc tcttcttttc ccatttacaa atgatttcgt gactgtagtt
1141 tttgttcacc ttctgtgcat ctggcctggg ggctgttagc tcagaggaga ggagcaaaca
1201 ggaaaatgac ttctgttctg tccccgctgt tttgggggaa gtctctccca ctttgggatc
1261 ctgctgaagc taggttcatg aggtcggaaa tccccaccac atttgcctag actttgggca
1321 caggagttct tagtccacca aatcagagag aggatgggct tttgatcaga tacccctccc
1381 aaaaaaaaaa aaaaaaaaaa aa
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