LOCUS BC000500 1071 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens stromal cell-derived factor 2, mRNA (cDNA clone MGC:8443 IMAGE:2821329), complete cds. ACCESSION BC000500 VERSION BC000500.2 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1071) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1071) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT On Nov 6, 2003 this sequence version replaced BC000500.1. Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 1 Row: f Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 14141194. FEATURES Location/Qualifiers source 1..1071 /db_xref="H-InvDB:HIT000029682" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:8443 IMAGE:2821329" /tissue_type="Lung, small cell carcinoma" /clone_lib="NIH_MGC_7" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..1071 /gene="SDF2" /db_xref="GeneID:6388" /db_xref="HGNC:HGNC:10675" /db_xref="MIM:602934" CDS 12..647 /gene="SDF2" /codon_start=1 /product="stromal cell-derived factor 2" /protein_id="AAH00500.1" /db_xref="GeneID:6388" /db_xref="HGNC:HGNC:10675" /db_xref="MIM:602934" /translation="MAVVPLLLLGGLWSAVGASSLGVVTCGSVVKLLNTRHNVRLHSH DVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRN LHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLS VTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSELLKAEAHHAEL" BASE COUNT 292 a 236 c 283 g 260 t ORIGIN 1 atacagttag gatggctgta gtacctctgc tgttgttggg gggtttgtgg agcgctgtgg 61 gagcgtccag cctgggtgtc gttacttgcg gctccgtggt gaagctactc aatacgcgcc 121 acaacgtccg actgcactca cacgacgtgc gctatgggtc aggtagtggg cagcagtcag 181 tgacaggtgt aacctctgtg gatgacagca acagttactg gaggatacgg gggaagagtg 241 ccacagtgtg tgagagggga acccccatca agtgtggcca gcccatccgg ctgacacatg 301 tcaacactgg ccgaaacctc catagtcacc acttcacttc acctctttct ggaaaccagg 361 aagtgagtgc ttttggtgag gaaggtgaag gtgattatct ggatgactgg acagtgctct 421 gtaatggacc ctactgggtg agagatggtg aggtgcggtt caaacactct tccactgagg 481 tactgctgtc tgtcacagga gaacaatatg gtcgacctat cagtgggcaa aaagaggtgc 541 atggcatggc ccagccaagt cagaacaact actggaaagc catggaaggc atcttcatga 601 agcccagtga gttgttgaag gcagaagccc accatgcaga gctgtgaatc tagaggctct 661 gagccactgt taacgcacaa tgttcacaga catctgttgc tgcctcacct tgggatccct 721 gccacaagtt ccttgggcag tggccatgtc accattgaga tgaagatata caacagaaaa 781 tagtggctgt gtttggaagc ttcagccctg cacatttgaa ctagtcactc tcccagactt 841 gcgtgggtca gttctttctg agtagaggac ttgctggtaa aggggcagat gctttttatt 901 agtactgata aaacaaactg agggaaacat ccctcttagc tgggaaactt ttactcttca 961 ggagcttggc atcatggact gttaatgtat gtgattttcc ccctattttc tctctccaaa 1021 atgataaaaa caataatttt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a //