LOCUS BC000500 1071 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens stromal cell-derived factor 2, mRNA (cDNA clone
MGC:8443 IMAGE:2821329), complete cds.
ACCESSION BC000500
VERSION BC000500.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1071)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1071)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000500.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: f Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14141194.
FEATURES Location/Qualifiers
source 1..1071
/db_xref="H-InvDB:HIT000029682"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8443 IMAGE:2821329"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1071
/gene="SDF2"
/db_xref="GeneID:6388"
/db_xref="HGNC:HGNC:10675"
/db_xref="MIM:602934"
CDS 12..647
/gene="SDF2"
/codon_start=1
/product="stromal cell-derived factor 2"
/protein_id="AAH00500.1"
/db_xref="GeneID:6388"
/db_xref="HGNC:HGNC:10675"
/db_xref="MIM:602934"
/translation="MAVVPLLLLGGLWSAVGASSLGVVTCGSVVKLLNTRHNVRLHSH
DVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRN
LHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLS
VTGEQYGRPISGQKEVHGMAQPSQNNYWKAMEGIFMKPSELLKAEAHHAEL"
BASE COUNT 292 a 236 c 283 g 260 t
ORIGIN
1 atacagttag gatggctgta gtacctctgc tgttgttggg gggtttgtgg agcgctgtgg
61 gagcgtccag cctgggtgtc gttacttgcg gctccgtggt gaagctactc aatacgcgcc
121 acaacgtccg actgcactca cacgacgtgc gctatgggtc aggtagtggg cagcagtcag
181 tgacaggtgt aacctctgtg gatgacagca acagttactg gaggatacgg gggaagagtg
241 ccacagtgtg tgagagggga acccccatca agtgtggcca gcccatccgg ctgacacatg
301 tcaacactgg ccgaaacctc catagtcacc acttcacttc acctctttct ggaaaccagg
361 aagtgagtgc ttttggtgag gaaggtgaag gtgattatct ggatgactgg acagtgctct
421 gtaatggacc ctactgggtg agagatggtg aggtgcggtt caaacactct tccactgagg
481 tactgctgtc tgtcacagga gaacaatatg gtcgacctat cagtgggcaa aaagaggtgc
541 atggcatggc ccagccaagt cagaacaact actggaaagc catggaaggc atcttcatga
601 agcccagtga gttgttgaag gcagaagccc accatgcaga gctgtgaatc tagaggctct
661 gagccactgt taacgcacaa tgttcacaga catctgttgc tgcctcacct tgggatccct
721 gccacaagtt ccttgggcag tggccatgtc accattgaga tgaagatata caacagaaaa
781 tagtggctgt gtttggaagc ttcagccctg cacatttgaa ctagtcactc tcccagactt
841 gcgtgggtca gttctttctg agtagaggac ttgctggtaa aggggcagat gctttttatt
901 agtactgata aaacaaactg agggaaacat ccctcttagc tgggaaactt ttactcttca
961 ggagcttggc atcatggact gttaatgtat gtgattttcc ccctattttc tctctccaaa
1021 atgataaaaa caataatttt aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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