LOCUS BC000482 2292 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens LIM domain binding 1, mRNA (cDNA clone MGC:8702
IMAGE:2964724), complete cds.
ACCESSION BC000482
VERSION BC000482.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2292)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2292)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000482.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: p Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39725686.
FEATURES Location/Qualifiers
source 1..2292
/db_xref="H-InvDB:HIT000029666"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8702 IMAGE:2964724"
/tissue_type="Muscle, rhabdomyosarcoma"
/clone_lib="NIH_MGC_17"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2292
/gene="LDB1"
/gene_synonym="CLIM2"
/gene_synonym="NLI"
/db_xref="GeneID:8861"
/db_xref="HGNC:HGNC:6532"
/db_xref="MIM:603451"
CDS 624..1751
/gene="LDB1"
/gene_synonym="CLIM2"
/gene_synonym="NLI"
/codon_start=1
/product="LIM domain binding 1"
/protein_id="AAH00482.1"
/db_xref="GeneID:8861"
/db_xref="HGNC:HGNC:6532"
/db_xref="MIM:603451"
/translation="MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQN
WTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATE
LYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKT
WHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQE
LMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGG
NTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAAN
GIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ"
BASE COUNT 503 a 715 c 648 g 426 t
ORIGIN
1 ggagaaaggc aggcagccgg cgggcgctgc gtgtgtgttt gagtgtgcga gtgtgagtga
61 gtgtgagtgc cgggtcctgc ctctcctggt gcccccagca gaggggcccg gtggcctggg
121 gagggcgggc gggctgctcg gaggcagagg cagcaagagg cggcggcggg gagagccgag
181 aaggaggagg aggagagagg aaagagcgga gcagccattg ttgagggaaa ccttgcaaac
241 aaagaaggct ccggactccc cgcggccccc cgccccccag gccggccccc tggcccccgg
301 cccccggccc agtggccatt gtaactttcc cccgggacag cggccgccgc ggggcgggcc
361 gaggctgtgc gtgcgagtct ttgtgcggcc ggcggactgg agctcccagt cgggcctgcc
421 cgtcccactc gggacatgag ctgctgaagt tgtccccccg tcagccctca cccctgccag
481 gactcctctg ggcttgcagt cgctcccccg tacctctcct ggccccctca gttctcccag
541 gttgttcctc aaagtcattc aagctgtact cgccgaagga gcccccgaac ggcaacgcct
601 ttcccccctt ccatcccggc accatgctgg atagggatgt gggcccaact cccatgtatc
661 cgcctacata cctggagcca gggattggga ggcacacacc atatggcaac caaactgact
721 acagaatatt tgagcttaac aaacggcttc agaactggac agaggagtgt gacaatctct
781 ggtgggatgc attcacgact gagttctttg aggatgatgc catgttgacc atcactttct
841 gcctggagga tggaccaaag agatatacca ttggccggac cctgatccca cgctacttcc
901 gcagcatctt tgaggggggt gctacggagc tgtactatgt tcttaagcac cccaaggagg
961 cattccacag caactttgtg tccctcgact gtgaccaggg cagcatggtg acccagcatg
1021 gcaagcccat gttcacccag gtgtgtgtgg agggccggtt gtacctggag ttcatgtttg
1081 acgacatgat gcggataaag acgtggcact tcagcatccg gcagcaccga gagctcatcc
1141 cccgcagcat ccttgccatg catgcccaag acccccagat gttggatcag ctctccaaaa
1201 acatcactcg gtgtgggctg tccaattcca ctctcaacta cctccgactc tgtgtgatac
1261 tcgagcccat gcaagagctc atgtcacgcc acaagaccta cagcctcagc ccccgcgact
1321 gcctcaagac ctgccttttc cagaagtggc agcgcatggt agcaccccct gcggagccca
1381 cacgtcagca gcccagcaaa cggcggaaac ggaagatgtc agggggcagc accatgagct
1441 ctggtggtgg caacaccaac aacagcaaca gcaagaagaa gagcccagct agcaccttcg
1501 ccctctccag ccaggtacct gatgtgatgg tggtggggga gcccaccctg atgggcgggg
1561 agttcgggga cgaggacgag aggctcatca cccggctgga gaacacccag tttgacgcag
1621 ccaacggcat tgacgacgag gacagcttta acaactcccc tgcactgggc gccaacagcc
1681 cctggaacag caagcctccg tccagccaag aaagcaaatc ggagaacccc acgtcacagg
1741 cctcccagta aaaggccctg ctgtggccac ccagtgctct gcctacctgc cccacccctc
1801 acagccccag ggagcagaag acagaatgaa gagactgagc atctaaaatg ggcagcctcc
1861 atccacccgc ttcagggagg aactggactc tctgggggca ggtgccaaga tttgcccccc
1921 cagtggccct gggctgggcc tggcctctac agagcctttt agggggaggg ggtactcatg
1981 tggatgccta cttggaacct gggcctctga gacatgtcct gaccaccccc cagggcattt
2041 gcctccatct tcaccccaga ttgtgggttt cccatccccc tgactttacc cctttcaagc
2101 ctggggttgt ctatacccac agcccttagg gacttaaagt tacggggctt cgttgaatgc
2161 tccttcccct aggcagctgg taatagaggg gtaaagctct gggcccctcc tccctgctgc
2221 cacttatccc agctccaagt ttttttaaaa ataatattat taaaaatgta agttaaaaaa
2281 aaaaaaaaaa aa
//