LOCUS BC000441 3210 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens junction plakoglobin, mRNA (cDNA clone IMAGE:2820715),
partial cds.
ACCESSION BC000441
VERSION BC000441.2
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3210)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3210)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000441.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: d Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4504810.
FEATURES Location/Qualifiers
source 1..3210
/db_xref="H-InvDB:HIT000029627"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:2820715"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..3210
/gene="JUP"
/gene_synonym="DP3"
/gene_synonym="DPIII"
/gene_synonym="PDGB"
/gene_synonym="PKGB"
/db_xref="GeneID:3728"
/db_xref="HGNC:HGNC:6207"
/db_xref="MIM:173325"
CDS <1..2357
/gene="JUP"
/gene_synonym="DP3"
/gene_synonym="DPIII"
/gene_synonym="PDGB"
/gene_synonym="PKGB"
/codon_start=3
/product="JUP protein"
/protein_id="AAH00441.2"
/db_xref="GeneID:3728"
/db_xref="HGNC:HGNC:6207"
/db_xref="MIM:173325"
/translation="PESGAAAARPRRAQFAVRAGSHPGPTPTRPGQAPYSVATMEVMN
LMEQPIKVTEWQQTYTYDSGIHSGANTCVPSVSSKGIMEEDEACGRQYTLKKTTTYTQ
GVPPSQGDLEYQMSTTARAKRVREAMCPGVSGEDSSLLLATQVEGQATNLQRLAEPSQ
LLKSAIVHLINYQDDAELATRALPELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRAL
MGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSS
PVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLL
AYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAGG
MQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLESVLKILVNQLSVDDVNVLTCA
TGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLTSRHPEA
EMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRL
VQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRMEIFRLNT
IPLFVQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHSRNEGTAT
YAAAVLFRISEDKNPDYRKRVSVELTNSLFKHDPAAWEAAQSMIPINEPYGDDLDATY
RPMYSSDVPLDPLEMHMDMDGDYPIDTYSDGLRPPYPTADHMLA"
BASE COUNT 658 a 1071 c 894 g 587 t
ORIGIN
1 ggccagagtc cggagcagcc gccgcccgac cgcgccgagc tcagttcgct gtccgcgccg
61 gctcccaccc cggcccgacc ccgacccggc ccggtcaggc cccatactca gtagccacga
121 tggaggtgat gaacctgatg gagcagccta tcaaggtgac tgagtggcag cagacataca
181 cctacgactc gggtatccac tcgggcgcca acacctgcgt gccctccgtc agcagcaagg
241 gcatcatgga ggaggatgag gcctgcgggc gccagtacac gctcaagaaa accaccactt
301 acacccaggg ggtgcccccc agccaaggtg acctggagta ccagatgtcc acaacagcca
361 gggccaaacg ggtgcgggag gccatgtgcc ctggtgtgtc aggcgaggac agctcgcttc
421 tgctggccac ccaggtggag gggcaggcca ccaacctgca gcgactggcc gagccgtccc
481 agctgctcaa gtcggccatt gtgcatctca tcaactacca ggacgatgcc gagctggcca
541 ctcgcgccct gcccgagctc accaaactgc tcaacgacga ggacccggtg gtggtgacca
601 aggcggccat gattgtgaac cagctgtcga agaaggaggc gtcgcggcgg gccctgatgg
661 gctcgcccca gctggtggcc gctgtcgtgc gtaccatgca gaataccagc gacctggaca
721 cagcccgctg caccaccagc atcctgcaca acctctccca ccaccgggag gggctgctcg
781 ccatcttcaa gtcgggtggc atccctgctc tggtccgcat gctcagctcc cctgtggagt
841 cggtcctgtt ctatgccatc accacgctgc acaacctgct cctgtaccag gagggcgcca
901 agatggccgt gcgcctggcc gacgggctgc aaaagatggt gcccctgctc aacaagaaca
961 accccaagtt cctggccatc accaccgact gcctgcagct cctggcctac ggcaaccagg
1021 agagcaagct gatcatcctg gccaatggtg ggccccaggc cctcgtgcag atcatgcgta
1081 actacagtta tgaaaagctg ctctggacca ccagtcgtgt gctcaaggtg ctatccgtgt
1141 gtcccagcaa taagcctgcc attgtggagg ctggtgggat gcaggccctg ggcaagcacc
1201 tgaccagcaa cagcccccgc ctggtgcaga actgcctgtg gaccctgcgc aacctctcag
1261 atgtggccac caagcaggag ggcctggaga gtgtgctgaa gattctggtg aatcagctga
1321 gtgtggatga cgtcaacgtc ctcacctgtg ccacgggcac actctccaac ctgacatgca
1381 acaacagcaa gaacaagacg ctggtgacac agaacagcgg tgtggaggct ctcatccatg
1441 ccatcctgcg tgctggtgac aaggacgaca tcacggagcc tgccgtctgc gctctgcgcc
1501 acctcactag ccgccaccct gaggccgaga tggcccagaa ctctgtgcgt ctcaactatg
1561 gcatcccagc catcgtgaag ctgctcaacc agcccaacca gtggccactg gtcaaggcaa
1621 ccatcggctt gatcaggaat ctggccctgt gcccagccaa ccatgccccg ctgcaggagg
1681 cagcggtcat cccccgcctc gtccaactgc tggtgaaggc ccaccaggat gcccagcgcc
1741 acgtagctgc aggcacacag cagccctaca cggatggtgt gaggatggag gagattgtgg
1801 agggctgcac cggagcactg cacatcctcg cccgggaccc catgaaccgc atggagatct
1861 tccggctcaa caccattccc ctgtttgtgc agctcctgta ctcgtcggtg gagaacatcc
1921 agcgcgtggc tgccggggtg ctgtgtgagc tggcccagga caaggaggcg gccgacgcca
1981 ttgatgcaga gggggcctcg gccccactca tggagttgct gcactcccgc aacgagggca
2041 ctgccaccta cgctgctgcc gtcctgttcc gcatctccga ggacaagaac ccagactacc
2101 ggaagcgcgt gtccgtggag ctcaccaact ccctcttcaa gcatgacccg gctgcctggg
2161 aggctgccca gagcatgatt cccatcaatg agccctatgg agatgacttg gatgccacct
2221 accgccccat gtactccagc gatgtgcccc ttgacccgct ggagatgcac atggacatgg
2281 atggagacta ccccatcgac acctacagcg acggcctcag gcccccgtac cccactgcag
2341 accacatgct ggcctaggcg gcctggcccc agtgcggttc ctcatctgag aggctctccg
2401 tgcaggcgat ggggcaagac agaaaagtgc ctgagctggg gaagccgggg tgtaacttcc
2461 tgctgcaccc tgcgcctcca gaggtcctcc gtagggtctt tcttgggata gtgttctgct
2521 cctgcttttc tgtcctgggc atgggtccag ggcctgacac cccctccccg cccctgtggc
2581 cctggccact aaagcttcag actcaagtac ccattctgtt ttcccccagc aacgcccctc
2641 caaacctcca gcctccctgt ctccagctgc ctgggcccgg aagggctttg gttccttctc
2701 tgggtctgat tttctcactg aactccaccg accaactgcc ctaagccccc agggcctcca
2761 gggcccaggt tcgagaccca aacccccaaa atccaaaact tctcttgaaa agttcaggga
2821 ccgtccaggg gagatgggga ggagatatgg agtgagtcac ctgctccaga agatgccagc
2881 ttctctctcc agggtgctta gttggctttg cccacccctc actccccagg gagctctggg
2941 gacagcttcc tcacacccct gtcccaccca cacagctgcc ctagctgacc ccgagaagtg
3001 ctcttggctg acccctctgg tgtgtggtga ggggctttct cttccccttc ctgtttcaga
3061 cccccccatt tcccgcacat ggtgtggggg gctgggggag gtccaagcag agtgttttat
3121 tattatcgct ttatgttttt ggttattggt ttttttgtat agaccaaagc aaagaaaata
3181 aaaataacac agaaaaaaaa aaaaaaaaaa
//