LOCUS BC000407 1708 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synaptogyrin 2, mRNA (cDNA clone MGC:8571
IMAGE:2823026), complete cds.
ACCESSION BC000407
VERSION BC000407.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1708)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1708)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000407.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: k Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52352813.
FEATURES Location/Qualifiers
source 1..1708
/db_xref="H-InvDB:HIT000029594"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8571 IMAGE:2823026"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1708
/gene="SYNGR2"
/db_xref="GeneID:9144"
/db_xref="HGNC:HGNC:11499"
/db_xref="MIM:603926"
CDS 10..684
/gene="SYNGR2"
/codon_start=1
/product="synaptogyrin 2"
/protein_id="AAH00407.1"
/db_xref="GeneID:9144"
/db_xref="HGNC:HGNC:11499"
/db_xref="MIM:603926"
/translation="MESGAYGAAKAGGSFDLRRFLTQPQVVARAVCLVFALIVFSCIY
GEGYSNAHESKQMYCVFNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRK
YLVIGDLLFSALWTFLWFVGFCFLTNQWAVTNPKDVLVGADSVRAAITFSFFSIFSWG
VLASLAYQRYKAGVDDFIQNYVDPTPDPNTAYASYPGASVDNYQQPPFTQNAETTEGY
QPPPVY"
BASE COUNT 315 a 530 c 474 g 389 t
ORIGIN
1 gacggcgaca tggagagcgg ggcctacggc gcggccaagg cgggcggctc cttcgacctg
61 cggcgcttcc tgacgcagcc gcaggtggtg gcgcgcgccg tgtgcttggt cttcgccttg
121 atcgtgttct cctgcatcta tggtgagggc tacagcaatg cccacgagtc taagcagatg
181 tactgcgtgt tcaaccgcaa cgaggatgcc tgccgctatg gcagtgccat cggggtgctg
241 gccttcctgg cctcggcctt cttcttggtg gtcgacgcgt atttccccca gatcagcaac
301 gccactgacc gcaagtacct ggtcattggt gacctgctct tctcagctct ctggaccttc
361 ctgtggtttg ttggtttctg cttcctcacc aaccagtggg cagtcaccaa cccgaaggac
421 gtgctggtgg gggccgactc tgtgagggca gccatcacct tcagcttctt ttccatcttc
481 tcctggggtg tgctggcctc cctggcctac cagcgctaca aggctggcgt ggacgacttc
541 atccagaatt acgttgaccc cactccggac cccaacactg cctacgcctc ctacccaggt
601 gcatctgtgg acaactacca acagccaccc ttcacccaga acgcggagac caccgagggc
661 taccagccgc cccctgtgta ctgagcggcg gttagcgtgg gaagggggac agagagggcc
721 ctcccctctg ccctggactt tcccatgagc ctcctggaac tgccagcccc tctctttcac
781 ctgttccatc ctgtgcagct gacacacagc taaggagcct catagcctgg cgggggctgg
841 cagagccaca ccccaagtgc ctgtgcccag agggcttcag tcagctgctc actcctccag
901 ggcactttta ggaaagggtt tttagctagt gtttttcctc gcttttaatg acctcagccc
961 cgcctgcagt ggctagaagc cagcaggtgc ccatgtgcta ctgacaagtg cctcagcttc
1021 cccccggccc gggtcaggcc gtgggagccg ctattatctg cgttctctgc caaagactcg
1081 tgggggccat cacacctgcc ctgtgcagcg gagccggacc aggctcttgt gtcctcactc
1141 aggtttgctt cccctgtgcc cactgctgta tgatctgggg gccaccaccc tgtgccggtg
1201 gcctctgggc tgcctcccgt ggtgtgaggg cggggctggt gctcatggca cttcctcctt
1261 gctcccaccc ctggcagcag ggaagggctt tgcctgacaa cacccagctt tatgtaaata
1321 ttctgcagtt gttacttagg aagcctgggg agggcagggg tgccccatgg ctcccagact
1381 ctgtctgtgc cgagtgtatt ataaaatcgt gggggagatg cccggcctgg gatgctgttt
1441 ggagacggaa taaatgtttt ctcattcagt ctccagtcat tggttgagcc acagcctagg
1501 ggttggagga agactccact ctgggtacac ccttaggggc tggctttatg gaacttgtag
1561 tttgaacaag gcagtggcaa tccgccccct ccagcctgcc tggctggccc ccttccctct
1621 gtctggggtc gcattccaca caagcctttc atcaacatct taaaatagta actgtgaaaa
1681 aaaaaaaaaa aaaaaaaaaa aaaaaaaa
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