LOCUS BC000405 1626 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens small nuclear ribonucleoprotein polypeptide A, mRNA
(cDNA clone MGC:8567 IMAGE:2822987), complete cds.
ACCESSION BC000405
VERSION BC000405.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1626)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1626)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000405.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: k Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39725715.
FEATURES Location/Qualifiers
source 1..1626
/db_xref="H-InvDB:HIT000029593"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8567 IMAGE:2822987"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1626
/gene="SNRPA"
/gene_synonym="U1A"
/db_xref="GeneID:6626"
/db_xref="HGNC:HGNC:11151"
/db_xref="MIM:182285"
CDS 536..1384
/gene="SNRPA"
/gene_synonym="U1A"
/codon_start=1
/product="small nuclear ribonucleoprotein polypeptide A"
/protein_id="AAH00405.1"
/db_xref="GeneID:6626"
/db_xref="HGNC:HGNC:11151"
/db_xref="MIM:182285"
/translation="MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIL
VSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV
ERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ
PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEE
TNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMK
ISFAKK"
BASE COUNT 341 a 507 c 429 g 349 t
ORIGIN
1 ctttgtggtt tggtctcagg gaagtagcag gcgccggttg agagaactac ggccctgtcg
61 gaaggtaacc tccggtgcaa acgaccatcg gcggcaggcg agcggtacgc ttggcgtccg
121 ggccttcctg ggcccgtctg aggaaacttg ctgctcgagg ccaggctgcc taggacctgt
181 cccttttttc tatactggct cccacatccg ggttttttct ccgggacggc ccttcggatg
241 cttgggccaa tgggaatcgc catttagggt gctccgccca ccgggtcgcg tagagcatcc
301 tggaagtcgt agtaaatctc tcgagagttc tctccgcacg cgggctggag aagcgggtcc
361 tacgcacgct ttgttgtcgc gctttgcctc cgtccttccc cctactcccg ccttacctga
421 cttccttttc ggaggaagat ccttgagcag ccgacgttgg gacaaaggat ttggagaaac
481 ccagggctaa agtcacgttt ttcctccttt aagacttacc tcaacacttc actccatggc
541 agttcccgag acccgcccta accacactat ttatatcaac aacctcaatg agaagatcaa
601 gaaggatgag ctaaaaaagt ccctgtacgc catcttctcc cagtttggcc agatcctgga
661 tatcctggta tcacggagcc tgaagatgag gggccaggcc tttgtcatct tcaaggaggt
721 cagcagcgcc accaacgccc tgcgctccat gcagggtttc cctttctatg acaaacctat
781 gcgtatccag tatgccaaga ccgactcaga tatcattgcc aagatgaaag gcaccttcgt
841 ggagcgggac cgcaagcggg agaagaggaa gcccaagagc caggagaccc cggccaccaa
901 gaaggctgtg caaggcgggg gagccacccc cgtggtgggg gctgtccagg ggcctgtccc
961 gggcatgccg ccgatgactc aggcgccccg cattatgcac cacatgccgg gccagccgcc
1021 ctacatgccg ccccctggta tgatcccccc gccaggcctt gcacctggcc agatcccacc
1081 aggggccatg cccccgcagc agcttatgcc aggacagatg ccccctgccc agcctctttc
1141 tgagaatcca ccgaatcaca tcttgttcct caccaacctg ccagaggaga ccaacgagct
1201 catgctgtcc atgcttttca atcagttccc tggcttcaag gaggtccgtc tggtacccgg
1261 gcggcatgac atcgccttcg tggagtttga caatgaggta caggcagggg cagctcgcga
1321 tgccctgcag ggctttaaga tcacgcagaa caacgccatg aagatctcct ttgccaagaa
1381 gtagcacctt ttccccccat gcctgcccct tcccctgttc tggggccacc cctttccccc
1441 ttggctcagc cccctgaagg taagtccccc cttgggggcc ttcttggagc cgtgtgtgag
1501 tgagtggtcg ccacacagca ttgtacccag agtctgtccc cagacattgc acctggcgct
1561 gttaggccgg aattaaagtg gctttttgag gtttggtttt tcacaaaaaa aaaaaaaaaa
1621 aaaaaa
//