LOCUS BC000398 1165 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens platelet-activating factor acetylhydrolase, isoform
Ib, beta subunit 30kDa, mRNA (cDNA clone MGC:8519 IMAGE:2822463),
complete cds.
ACCESSION BC000398
VERSION BC000398.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1165)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1165)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000398.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: i Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4505584.
FEATURES Location/Qualifiers
source 1..1165
/db_xref="H-InvDB:HIT000029587"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8519 IMAGE:2822463"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1165
/gene="PAFAH1B2"
/db_xref="GeneID:5049"
/db_xref="HGNC:HGNC:8575"
/db_xref="MIM:602508"
CDS 118..807
/gene="PAFAH1B2"
/codon_start=1
/product="platelet-activating factor acetylhydrolase,
isoform Ib, beta subunit 30kDa"
/protein_id="AAH00398.1"
/db_xref="GeneID:5049"
/db_xref="HGNC:HGNC:8575"
/db_xref="MIM:602508"
/translation="MSQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLF
VGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWV
GTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLL
KVSLPKLANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLE
ETPEEKQTTIA"
BASE COUNT 350 a 244 c 292 g 279 t
ORIGIN
1 gggccggagg agggacgcgc cggagcggga ccgacgggac cgagcgagcg accgacgcgc
61 cacccgccga cgcctcagcc gcttggggcc cgcacggacc ctctacttca gtgtagaatg
121 agccaaggag actcaaaccc agcagctatt ccgcatgcag cagaagatat tcaaggagat
181 gaccgatgga tgtctcagca caacagattt gttttggact gtaaagacaa agagcctgat
241 gtactgttcg tgggagactc catggtgcag ttaatgcagc aatatgagat atggcgagag
301 cttttttccc cacttcatgc actgaatttt ggaattgggg gagatacaac aagacatgtt
361 ttgtggagac taaagaatgg agaactggag aatattaagc ctaaggtcat tgttgtctgg
421 gtaggaacaa ataaccacga aaatacagca gaagaagtag caggtgggat cgaggccatt
481 gtacaactta tcaacacaag gcagccacag gccaaaatca ttgtattggg tttgttacct
541 cgaggtgaga aacccaatcc tttgaggcaa aagaacgcca aggtgaacca actcctcaag
601 gtttcgctgc cgaagcttgc caacgtgcag ctcctggata ccgacggggg ttttgtgcac
661 tcggacggtg ccatctcctg ccacgacatg tttgattttc tgcatctgac aggagggggc
721 tatgcaaaga tctgcaaacc cctgcatgaa ctgatcatgc agttgttgga ggaaacacct
781 gaggagaaac aaaccaccat tgcctgactg gctcttatca gtgttaatag catctcagct
841 tcctcagatc agttctatca ctggcactac agaatccttc tctttcttaa ggcactttgc
901 attgtagaat gttcctggat gttcatatct agtgtttgaa ggggaggagg gatttaaact
961 ggtcctgtac atagaaggtt tgtttgacag aggagaaaaa ttagccaagg aagattgttg
1021 tttaaattca tttgaaacca gaaggggact ttttagttgt atgtgtaaca cattcattga
1081 attattatca ctgttttctt gggacaacat caagcctaaa tactgaacaa tatgaagatt
1141 aaaaaaaaaa aaaaaaaaaa aaaaa
//