LOCUS BC000336 1465 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens secretagogin, EF-hand calcium binding protein, mRNA
(cDNA clone MGC:8532 IMAGE:2822613), complete cds.
ACCESSION BC000336
VERSION BC000336.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1465)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1465)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 20, 2003 this sequence version replaced BC000336.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: i Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 59814903.
FEATURES Location/Qualifiers
source 1..1465
/db_xref="H-InvDB:HIT000029530"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8532 IMAGE:2822613"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1465
/gene="SCGN"
/gene_synonym="DJ501N12.8"
/gene_synonym="SECRET"
/gene_synonym="SEGN"
/gene_synonym="setagin"
/db_xref="GeneID:10590"
/db_xref="HGNC:HGNC:16941"
/db_xref="MIM:609202"
CDS 171..1001
/gene="SCGN"
/gene_synonym="DJ501N12.8"
/gene_synonym="SECRET"
/gene_synonym="SEGN"
/gene_synonym="setagin"
/codon_start=1
/product="secretagogin, EF-hand calcium binding protein"
/protein_id="AAH00336.1"
/db_xref="GeneID:10590"
/db_xref="HGNC:HGNC:16941"
/db_xref="MIM:609202"
/translation="MDSSREPTLGRLDAAGFWQVWQRFDADEKGYIEEKELDAFFLHM
LMKLGTDDTVMKANLHKVKQQFMTTQDASKDGRIRMKELAGMFLSEDENFLLLFRREN
PLDSSVEFMQIWRKYDADSSGFISAAELRNFLRDLFLHHKKAISEAKLEEYTGTMMKI
FDRNKDGRLDLNDLARILALQENFLLQFKMDACSTEERKRDFEKIFAYYDVSKTGALE
GPEVDGFVKDMMELVQPSISGVDLDKFREILLRHCDVNKDGKIQKSELALCLGLKINP
"
BASE COUNT 379 a 330 c 368 g 388 t
ORIGIN
1 gctcagcgac gccacggcca gcagcgctcg cgtcctcccc agcaacagtt actcaaagct
61 aatcagatag cgaaagaagc aggagagcaa gtcaagaaat acggtgaaga gtccttccca
121 aagttgtcta ggtccttccg cgccggtgcc tggtcttcgt cgtcaacacc atggacagct
181 cccgggaacc gactctgggg cgcttggacg ccgctggctt ctggcaggtc tggcagcgct
241 ttgatgcgga tgaaaaaggt tacatagaag agaaggaact cgatgctttc tttctccaca
301 tgttgatgaa actgggtact gatgacacgg tcatgaaagc aaatttgcac aaggtgaaac
361 agcagtttat gactacccaa gatgcctcta aagatggtcg cattcggatg aaagagcttg
421 ctggtatgtt cttatctgag gatgaaaact ttcttctgct ctttcgccgg gaaaacccac
481 tggacagcag cgtggagttt atgcagattt ggcgcaaata tgacgctgac agcagtggct
541 ttatatcagc tgctgagctc cgcaacttcc tccgagacct ctttcttcac cacaaaaagg
601 ccatttctga ggctaaactg gaagaataca ctggcaccat gatgaagatt tttgacagaa
661 ataaagatgg tcggttggat ctaaatgact tagcaaggat tctggctctt caggaaaact
721 tccttctcca atttaaaatg gatgcttgtt ctactgaaga aaggaaaagg gactttgaga
781 aaatctttgc ctactatgat gttagtaaaa caggagccct ggaaggccca gaagtggatg
841 ggtttgtcaa agacatgatg gagcttgtcc agcccagcat cagcggggtg gaccttgata
901 agttccgcga gattctcctg cgtcactgcg acgtgaacaa ggatggaaaa attcagaagt
961 ctgagctggc tttgtgtctt gggctgaaaa tcaacccata atcccagact gctttgcctt
1021 ttgctcttac tatgtttctg tgatcttgct ggtagaattg tatctgtgca ttgatgttgg
1081 gaacacagtg ggcaaactca caaatggtgt gctattcttg ggcaagaaga gggacgctag
1141 ggccttcctt ccaccggcgt gatctatccc tgtctcactg aaagcccctg tgtagtgtct
1201 gtgttgtttt cccttgaccc tgggctttcc tatcctccca aagactcagc tcccctgtta
1261 gatggctctg cctgtccttc cccagtcacc agggtggggg ggacaggggc agctgagtgc
1321 attcattttg tgcttttctt atgggctttc tgcttagtct gaaaggtgtg tggcattcat
1381 ggcaatcctg taacttcaac atagattttt tttgtgtgtg tggaaataaa tctgcaattg
1441 gaaacaaaaa aaaaaaaaaa aaaaa
//