LOCUS BC000306 1125 bp mRNA linear HUM 14-SEP-2006
DEFINITION Homo sapiens hydroxyacyl-Coenzyme A dehydrogenase, mRNA (cDNA clone
MGC:8392 IMAGE:2820507), complete cds.
ACCESSION BC000306
VERSION BC000306.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1125)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1125)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Nov 6, 2003 this sequence version replaced BC000306.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 1 Row: c Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4885386.
FEATURES Location/Qualifiers
source 1..1125
/db_xref="H-InvDB:HIT000029503"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:8392 IMAGE:2820507"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1125
/gene="HADH"
/gene_synonym="HAD"
/gene_synonym="HADH1"
/gene_synonym="HHF4"
/gene_synonym="M/SCHAD"
/gene_synonym="MGC8392"
/gene_synonym="SCHAD"
/db_xref="GeneID:3033"
/db_xref="HGNC:HGNC:4799"
/db_xref="MIM:601609"
CDS 28..972
/gene="HADH"
/gene_synonym="HAD"
/gene_synonym="HADH1"
/gene_synonym="HHF4"
/gene_synonym="M/SCHAD"
/gene_synonym="MGC8392"
/gene_synonym="SCHAD"
/codon_start=1
/product="hydroxyacyl-Coenzyme A dehydrogenase"
/protein_id="AAH00306.1"
/db_xref="GeneID:3033"
/db_xref="HGNC:HGNC:4799"
/db_xref="MIM:601609"
/translation="MAFVTRQFMRSVSSSSTASASAKKIIVKHVTVIGGGLMGAGIAQ
VAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT
STDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANAT
TRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFI
VNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDG
WHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK"
BASE COUNT 322 a 281 c 278 g 244 t
ORIGIN
1 cctcgctgtc gccgccgctg ccacaccatg gccttcgtca ccaggcagtt catgcgttcc
61 gtgtcctcct cgtccaccgc ctcggcctcg gccaagaaga taatcgtcaa gcacgtgacg
121 gtcatcggcg gcgggctgat gggcgccggc attgcccagg ttgctgcagc aactggtcac
181 acagtagtgt tggtagacca gacagaggac atcctggcaa aatccaaaaa gggaattgag
241 gaaagcctta ggaaagtggc aaagaagaag tttgcagaaa accctaaggc cggcgatgaa
301 tttgtggaga agaccctgag caccatagcg accagcacgg atgcagcctc cgttgtccac
361 agcacagact tggtggtgga agccatcgtg gagaatctga aggtgaaaaa cgagctcttc
421 aaaaggctgg acaagtttgc tgctgaacat acaatctttg ccagcaacac ttcctccttg
481 cagattacaa gcatagctaa tgccaccacc agacaagacc gattcgctgg cctccatttc
541 ttcaacccag tgcctgtcat gaaacttgtg gaggtcatta aaacaccaat gaccagccag
601 aagacatttg aatctttggt agactttagc aaagccctag gaaagcatcc tgtttcttgc
661 aaggacactc ctgggtttat tgtgaaccgc ctcctggttc catacctcat ggaagcaatc
721 aggctgtatg aacgaggtga cgcatccaaa gaagacattg acactgctat gaaattagga
781 gccggttacc ccatgggccc atttgagctt ctagattatg tcggactgga tactacgaag
841 ttcatcgtgg atgggtggca tgaaatggat gcagagaacc cattacatca gcccagccca
901 tccttaaata agctggtagc agagaacaag ttcggcaaga agactggaga aggattttac
961 aaatacaagt gatgtgcagc ttctccggct ctgagaagaa cacctgagag cgctttccag
1021 ccagtgcccc gagtgcctgt gggaatgctc tttggtcaga cattccctca cacagtacag
1081 attaataaat gtgcattttg attgtaaaaa aaaaaaaaaa aaaaa
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