LOCUS BC000274 1724 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens single stranded DNA binding protein 4, mRNA (cDNA
clone MGC:3181 IMAGE:3356283), complete cds.
ACCESSION BC000274
VERSION BC000274.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1724)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1724)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (15-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: m Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 58218983.
FEATURES Location/Qualifiers
source 1..1724
/db_xref="H-InvDB:HIT000029480"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3181 IMAGE:3356283"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1724
/gene="SSBP4"
/gene_synonym="MGC3181"
/db_xref="GeneID:170463"
/db_xref="HGNC:HGNC:15676"
/db_xref="MIM:607391"
CDS 221..1378
/gene="SSBP4"
/gene_synonym="MGC3181"
/codon_start=1
/product="single stranded DNA binding protein 4"
/protein_id="AAH00274.1"
/db_xref="GeneID:170463"
/db_xref="HGNC:HGNC:15676"
/db_xref="MIM:607391"
/translation="MYAKGGKGSAVPSDSQAREKLALYVYEYLLHIGAQKSAQTFLSE
IRWEKNITLGEPPGFLHSWWCVFWDLYCAAPDRREACEHSGEAKAFQDYSAAAAPSPV
MGSMAPGDTMAAGSMAAGFFQGPPGSQPSPHNPNAPMMGPHGQPFMSPRFPGGPRPTL
RMPSQPPAGLPGSQPLLPGAMEPSPRAQGHPSMGGPMQRVTPPRGMASVGPQSYGGGM
RPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM
PSPGDSTNSSENMYTIMNPIGQGAGRANFPLGPGPEGPMAAMSAMEPHHVNGSLGSGD
MDGLPKSSPGAVAGLSNAPGTPRDDGEMAAAGTFLHPFPSESYSPGMTMSV"
BASE COUNT 310 a 605 c 546 g 263 t
ORIGIN
1 gaggaaaaaa agccaccctg cggccggggc cggagctgga gccgccgctg ccgccgccgc
61 cgcggccgtc tggagctccc ccgcgcggac gatgcctgcc gtgcccgcct ggggctcggg
121 gcggtgaggc ccggggcgcg gggtagctat ggcgacggca agcgcggccc gcggcgccgc
181 ctgacaggtg tgggccccgg cggcggcggc gtggagcagc atgtacgcca aggggggcaa
241 gggttcggcc gtgccctccg acagccaggc ccgcgagaag ttggcgctgt acgtttatga
301 gtacctgctg cacatcggtg cccagaagtc agcccagacc ttcctgtctg agatccgatg
361 ggagaagaac atcacgctgg gggagccccc tgggttcctg cactcctggt ggtgcgtctt
421 ctgggacctg tactgcgcgg cgcctgacag aagagaggcc tgcgagcact ccggcgaggc
481 caaggccttc caggactata gtgctgcagc cgcccccagc cccgttatgg ggagtatggc
541 cccaggtgac acaatggccg caggctccat ggcggctggc ttcttccagg gcccccccgg
601 ctcccagccg tccccccaca accccaacgc ccccatgatg gggcctcacg gtcagccctt
661 catgtcaccg cgcttcccag ggggcccccg gcccaccctg cggatgccga gtcagcctcc
721 cgcaggcctc cctggctccc agcccctcct ccctggcgcc atggagccct ccccacgagc
781 ccaggggcat ccgagcatgg gcggcccaat gcagagggtg acgcctcctc gtggcatggc
841 cagcgtgggg ccccagagct atggaggtgg catgcgaccc ccacccaact ccctcgccgg
901 cccaggcctg cctgccatga acatgggccc aggagttcgt ggcccgtggg ccagccccag
961 tggaaactcg atcccctact cctcctcatc ccccggcagc tacaccggac ccccaggagg
1021 aggtgggccc cctggaacac ccatcatgcc tagccctgga gattccacca actccagcga
1081 aaacatgtac actatcatga accccatcgg gcagggcgcc ggcagggcta atttcccgct
1141 cggccctggc ccggagggcc ccatggccgc catgagcgcg atggagcctc accacgtgaa
1201 cggatccctg ggctcgggcg acatggacgg gttgccgaag agttcccccg gcgccgtggc
1261 cggcctgagc aacgccccgg gcaccccgcg ggacgacggc gagatggcgg ccgccgggac
1321 cttcctgcac ccgttcccga gcgaaagcta ctcgccaggg atgaccatga gcgtgtgatg
1381 gggcggcagc cccgggcctc tctgcgggcc taggcttctg cccagcgccc ctgctcaggg
1441 cgaggggctg aggtcacacc tcgggcacct ggactcctgg ccaatcaagg cttgcccagc
1501 tgggaggccc cacacgaaag actcttacca ttttattaaa aacgcaagga cctcagagac
1561 gttcttttct gtatggaccc ttcctgccat ttgtattttg tcccagagag aaaggctctt
1621 tggggggccc ctctccccag gacgtcaggg ggtggggccc ataaataaat ggaagctggt
1681 tttggttttt ggtaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
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