LOCUS BC000264 846 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sodium channel modifier 1, mRNA (cDNA clone MGC:3180
IMAGE:3356277), complete cds.
ACCESSION BC000264
VERSION BC000264.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 846)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 846)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: m Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50363222.
FEATURES Location/Qualifiers
source 1..846
/db_xref="H-InvDB:HIT000029472"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3180 IMAGE:3356277"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..846
/gene="SCNM1"
/gene_synonym="MGC3180"
/db_xref="GeneID:79005"
/db_xref="HGNC:HGNC:23136"
/db_xref="MIM:608095"
CDS 76..768
/gene="SCNM1"
/gene_synonym="MGC3180"
/codon_start=1
/product="sodium channel modifier 1"
/protein_id="AAH00264.1"
/db_xref="GeneID:79005"
/db_xref="HGNC:HGNC:23136"
/db_xref="MIM:608095"
/translation="MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFAC
AICPHRPVLDTLAMLTAHRAGKKHLSSLQLFYGKKQPGKERKQNPKHQNELRREETKA
EAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPSVSLSPMPPSEVKLQSGKISR
EPEPAAGPQAEESATVSAPAPMSPTRRRALDHYLTLRSSGWIPDGRGRWVKDENVEFD
SDEEEPPDLPLD"
BASE COUNT 253 a 221 c 207 g 165 t
ORIGIN
1 gctcttgcta cggtggcctg gaggagtggc gaaaccggaa cagagaattt atcacttctg
61 ggactcacag tcgtgatgtc tttcaagagg gaaggagacg attggagtca actcaatgtg
121 ctcaaaaaaa gaagagtcgg ggacctccta gccagttaca ttccagagga tgaggcgctg
181 atgcttcggg atggacgctt tgcttgtgcc atctgccccc atcgaccggt actggacacc
241 ctggccatgc tgactgccca ccgtgcaggc aagaaacatc tgtccagctt gcagcttttc
301 tatggcaaga agcagccggg aaaggaaaga aagcagaatc caaaacatca gaatgaattg
361 agaagggaag aaaccaaagc tgaggctcct ctgctaactc agacacgact tatcacccag
421 agtgctctgc acagagctcc ccactataac agttgctgcc gccggaagta cagaccagaa
481 gcccctggtc cctctgtctc cctttcccct atgccaccct cagaggtcaa actccaaagt
541 gggaagatca gtagggaacc tgaacctgcg gctggcccac aggccgagga gtcagcaact
601 gtctcagccc ctgcacccat gagccccaca agaagacgag ccctggacca ttatctcacc
661 cttcgaagct ctggatggat cccagatgga cgaggtcgat gggtaaaaga tgaaaatgtt
721 gagtttgact ctgatgagga ggaaccacct gatctcccct tggactgata cccttttccc
781 attcattcac aaataaatta caatgggtgc tgagaaaaaa aaaaaaaaaa aaaaaaaaaa
841 aaaaaa
//