LOCUS BC000246 4691 bp mRNA linear HUM 11-AUG-2006
DEFINITION Homo sapiens RNA polymerase II associated protein 1, mRNA (cDNA
clone MGC:858 IMAGE:3357380), complete cds.
ACCESSION BC000246
VERSION BC000246.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4691)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4691)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: a Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24430138.
FEATURES Location/Qualifiers
source 1..4691
/db_xref="H-InvDB:HIT000029456"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:858 IMAGE:3357380"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..4691
/gene="RPAP1"
/gene_synonym="DKFZP727M111"
/gene_synonym="FLJ12732"
/gene_synonym="KIAA1403"
/gene_synonym="MGC858"
/db_xref="GeneID:26015"
/db_xref="HGNC:HGNC:24567"
CDS 118..4299
/gene="RPAP1"
/gene_synonym="DKFZP727M111"
/gene_synonym="FLJ12732"
/gene_synonym="KIAA1403"
/gene_synonym="MGC858"
/codon_start=1
/product="RNA polymerase II associated protein 1"
/protein_id="AAH00246.2"
/db_xref="GeneID:26015"
/db_xref="HGNC:HGNC:24567"
/translation="MLSRPKPGESEVDLLHFQSQFLAAGAAPAVQLVKKGNRGGGDAN
SDRPPLQDHRDVVMLDNLPDLPPALVPSPPKRARPSPGHCLPEDEDPEERLRRHDQHI
TAVLTKIIERDTSSVAVNLPVPSGVAFPAVFLRSRDTQGKSATSGKRSIFAQEIAARR
IAEAKGPSVGEVVPNVGPPEGAVTCETPTPRNQGCQLPGSSHSFQGPNLVTGKGLRDQ
EAEQEAQTIHEENIARLQAMAPEEILQEQQRLLAQLDPSLVAFLRSHSHTQEQTGETA
SEEQRPGGPSANVTKEEPLMSAFASEPRKRDKLEPEAPALALPVTPQKEWLHMDTVEL
EKLHWTQDLPPVRRQQTQERMQARFSLQGELLAPDVDLPTHLGLHHHGEEAERAGYSL
QELFHLTRSQVSQQRALALHVLAQVISRAQAGEFGDRLAGSVLSLLLDAGFLFLLRFS
LDDRVDGVIATAIRALRALLVAPGDEELLDSTFSWYHGALTFPLMPSQEDKEDEDKDE
ECPAGKAKRKSPEEESRPPPDLARHDVIKGLLATSLLPRLRYVLEVTYPGPAVVLDIL
AVLIRLARHSLESATRVLECPRLIETIVREFLPTSWSPVGAGPTPSLYKVPCATAMKL
LRVLASAGRNIAARLLSSFDLRSRLCRIIAEAPQELALPPEEAEMLSTEALRLWAVAA
SYGQGGYLYRELYPVLMRALQVVPRELSTHPPQPLSMQRIASLLTLLTQLTLAAGSTP
AETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQTLKLLSRPEMWRAVGPVPVAC
LLFLGAYYQAWSQQPSSCPEDWLQDMERLSEELLLPLLSQPTLGSLWDSLRHCSLLCN
PLSCVPALEAPPSLVSLGCSGGCPRLSLAGSASPFPFLTALLSLLNTLAQIHKGLCGQ
LAAILAAPGLQNYFLQCVAPGAAPHLTPFSAWALRHEYHLQYLALALAQKAAALQPLP
ATHAALYHGMALALLSRLLPGSEYLTHELLLSCVFRLEFLPERTSGGPEAADFSDQLS
LGSSRVPRCGQGTLLAQACQDLPSIRNCYLTHCSPARASLLASQALHRGELQRVPTLL
LPMPTEPLLPTDWPFLPLIRLYHRASDTPSGLSPTDTMGTAMRVLQWVLVLESWRPQA
LWAVPPAARLARLMCVFLVDSELFRESPVQHLVAALLAQLCQPQVLPNLNLDCRLPGL
TSFPDLYANFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGALRALSLP
LTQLPVSLECYTVPPEDNLALLQLYFRTLVTGALRPRWCPVLYAVAVAHVNSFIFSQD
PQSSDEVKAARRSMLQKTWLLADEGLRQHLLHYKLPNSTLPEGFELYSQLPPLRQHYL
QRLTSTVLQNGVSET"
BASE COUNT 940 a 1443 c 1321 g 987 t
ORIGIN
1 ctgcggggca agatggcggc gcccagacag gcctggagca cggatgaata agagggaacc
61 cccacacgga gacactgctg gagagagtcg tactggggag gcagctggag cagcaagatg
121 ctgtcgagac cgaagccagg ggagtccgag gtggacctgc tgcacttcca gagtcagttt
181 ctcgcagctg gtgcagcccc agcagtgcag ctggtgaaga aaggaaatag gggcggtggt
241 gatgccaact cagaccggcc tccgctccag gaccatcggg atgtggtgat gttggacaat
301 ctcccagatt tgcccccagc tttggtccct tctcctccaa agagagccag gcccagccct
361 ggccactgcc tgcctgagga tgaggaccca gaagagaggc tgaggaggca tgatcagcac
421 atcactgctg tcttgactaa gattattgaa cgagatacaa gttcagtggc cgtgaatctg
481 cctgtgccca gtggtgttgc tttccctgct gtgttccttc gctcgcggga cacacagggg
541 aaatcagcaa catctggtaa gagaagcatc tttgcccagg aaattgcggc aaggaggata
601 gctgaagcca agggcccatc agttggggaa gttgtgccca acgtgggccc accagagggt
661 gccgtgacct gtgagacacc cactcctagg aaccagggct gccagcttcc tgggagcagc
721 cacagctttc agggacccaa tctggtcaca gggaaggggc tcagggatca agaagctgag
781 caggaagccc agactatcca tgaagagaac atagcaagac tgcaggccat ggctcctgag
841 gagatcctgc aggaacagca gcggttgctg gcccagcttg accccagctt ggttgctttc
901 ttgagatctc acagccacac gcaagagcaa acaggagaga cagcctctga ggagcagagg
961 ccaggaggac cctctgctaa tgtcaccaag gaggaacccc tcatgtcagc ttttgccagt
1021 gagcccagga agagagacaa gctggagcca gaagccccag ctctggcatt gcccgtgacc
1081 cctcagaaag aatggctgca catggacact gtcgagctgg agaagctcca ctggacccag
1141 gacttgcccc ctgtccggcg gcagcagaca caggagagga tgcaggctcg gttcagtctt
1201 cagggagaac tactggcccc tgacgtggac ctgcccaccc acctgggtct gcaccaccat
1261 ggagaggagg cagagagagc ggggtattcc ctacaggagc tgttccacct gacccgcagc
1321 caggtttccc agcagagagc actggcactg catgtgttag cccaggtcat cagcagggcc
1381 caggctggtg agtttgggga ccggctagca ggcagtgtct taagcctcct tttggatgct
1441 ggtttcctct tcctactgcg cttctccttg gatgacagag tggatggggt cattgcaacc
1501 gccatccgtg ctcttcgggc tctgctggtg gctcctggag atgaggagct cctcgacagc
1561 accttctctt ggtaccatgg agctttgacg ttccctctga tgcccagcca ggaggacaag
1621 gaggatgagg acaaggatga agaatgccca gcaggaaaag caaaaaggaa aagccctgaa
1681 gaagaaagcc ggcctccacc tgacctggcc cgacatgatg tcatcaaggg gctcctggct
1741 accagcctgc tgcctcggct gcgctacgtg ctggaggtga catacccagg acctgcggtg
1801 gtccttgaca tcctggctgt gctcatccgc ctggcccggc attccctgga atcagccaca
1861 agggtcctgg agtgccctcg gctgatagag actatagttc gagagttctt gcccaccagt
1921 tggtctcctg tgggggcagg gcctacccct agtctataca aagtaccctg tgctactgcc
1981 atgaaactac ttcgtgtcct ggcctcagct gggaggaata ttgctgcccg gctgttgagc
2041 agctttgatc tccggagccg cctgtgccgc atcatagctg aggctcccca agaactggcc
2101 ttgcccccag aggaagctga gatgctgagc accgaggccc tccgtctgtg ggctgtggct
2161 gcctcctatg gccagggcgg ttacctttac agggagctct acccagtgct gatgcgggcc
2221 ttgcaggtgg tgccgcggga gctcagcacc cacccacctc aacccctgtc catgcagcgg
2281 atagcctcac tgctcactct cctcacccag ctaaccctgg cagccggcag tacccctgct
2341 gaaaccatca gtgattctgc tgaggccagc ctctcggcca ccccttcctt agtcacttgg
2401 acacaggtgt ctgggctcca gcctcttgtt gagccgtgtc taaggcagac cttgaagttg
2461 ctgtccagac ctgagatgtg gagagccgtg ggcccagtgc ccgttgcctg cctgttgttc
2521 ctgggagcct actaccaggc ctggagccag caaccaagct catgcccgga ggattggctc
2581 caggacatgg agcgcctgtc agaggagctg ctgctgccac tgctgagtca gcccacactg
2641 ggcagcctgt gggattccct taggcactgc tcccttctct gcaacccgct gtcctgtgtg
2701 ccagcccttg aagctccccc cagcctcgtg tcactgggct gctcgggagg ctgcccccgt
2761 ctcagtctgg ctggctcagc ctcacccttc ccattcctca ctgccctcct ctctcttctt
2821 aataccctgg cccagatcca caaggggctg tgtggccagc tggctgccat attggctgcc
2881 ccgggactcc agaattactt cctccagtgt gtggctcctg gggctgcccc acacctcaca
2941 cctttctctg catgggccct gcgccatgag taccacctgc agtacctggc actcgctctg
3001 gcccagaaag cggcagcgct gcagccactg ccagccaccc atgctgccct ctatcatggt
3061 atggccttgg ccctgctgag ccggctgctg cccggaagtg agtacctcac ccatgagctg
3121 ctgctgagct gtgtattccg gctggagttc ctcccggaaa gaacatcagg gggtccagag
3181 gcagccgact tctctgacca gctgtcgtta ggaagcagca gggtccctcg gtgtgggcaa
3241 gggactctgc tggctcaggc ctgccaggac ctccccagca tccgcaactg ctacctgact
3301 cattgctcgc cagcccgagc cagtctgctg gcctcccagg ctctgcaccg aggggagcta
3361 cagcgagtcc caaccctgct actgcccatg cctacggagc cgctgctgcc caccgactgg
3421 cccttcctgc cactgattcg cctctaccac cgggcttcag acaccccctc gggactctct
3481 cccacagaca ccatgggcac agccatgcgg gtcctgcagt gggtgctagt tttggagagc
3541 tggcgccccc aggctctctg ggctgtgccc cctgctgccc gcctggcacg gctcatgtgt
3601 gtgttcctgg tggacagtga gctgttccgg gagtccccag tacagcatct ggtggcagcc
3661 ctcctcgccc agctctgtca gcctcaagtc ttgccaaacc tcaacctgga ctgccgactc
3721 cctggcctga cgtctttccc tgacctctat gccaacttcc tggatcattt tgaggctgtc
3781 tcttttgggg accacctctt tggggccctg gtcctcctgc ccctgcagcg tcggttcagt
3841 gtcaccttgc gccttgccct ctttggggaa cacgtgggag ccttgcgagc tctgagcctg
3901 cctctgaccc agttgcctgt gtccctggag tgttacacag tgcctcctga agacaacctg
3961 gccctccttc agctctactt ccggaccctg gttactggtg cgctccgccc acgttggtgc
4021 cccgtgctct atgctgtggc tgtggctcat gtcaatagct tcatcttctc tcaggaccca
4081 cagagctcag atgaggtcaa agctgcccgc aggagtatgc tgcagaaaac atggctgctg
4141 gcagatgagg gtctccggca gcacctcctg cactataagc ttcccaattc cacgctccca
4201 gagggctttg agctctattc tcagttgccc cctctgcgtc agcactacct ccagagactg
4261 acttcaacag tgctccaaaa tggggtatca gagacctagg atagttgata tagatggaaa
4321 gatgggtacg ttgtcctgta tccagccttt caacagatgt ctggccagac gaagaacatt
4381 gtgtcctaat ggtaggcagg agaccaagga gcagaaggct tgccttcctg ggagcaggtt
4441 gtttgagctg ttttagagca gtgagcccta ccattacatc ctgatatctg gggcttctga
4501 aggtctgtgc tgggagtgaa gagtggctta gctatttacc cgctctttgg ggacagggca
4561 aactaaatgc atcccttctt acctaactcc caacccctgc cctgggctga ggcatatgaa
4621 tgctatagtt gtgcattaaa ataaatgttt tttatctcct ggaaaaaaaa aaaaaaaaaa
4681 aaaaaaaaaa a
//