LOCUS BC000207 1286 bp mRNA linear HUM 12-FEB-2004
DEFINITION Homo sapiens leucine rich repeat and fibronectin type III domain
containing 4, mRNA (cDNA clone IMAGE:3350518), partial cds.
ACCESSION BC000207
VERSION BC000207.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1286)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1286)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: a Column: 3.
FEATURES Location/Qualifiers
source 1..1286
/db_xref="H-InvDB:HIT000029431"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:3350518"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..1286
/gene="LRFN4"
/gene_synonym="MGC3103"
/db_xref="GeneID:78999"
CDS <1..985
/gene="LRFN4"
/gene_synonym="MGC3103"
/codon_start=2
/product="LRFN4 protein"
/protein_id="AAH00207.2"
/db_xref="GeneID:78999"
/translation="APTMHWVGPDDRLVGNSSRARAFPNGTLEIGVTGAGDAGGYTCI
ATNPAGEATARVELRVLALPHGGNSSAEGGRPGPSDIAASARTAAEGEGTLESEPAVQ
VTEVTATSGLVSWGPGRPADPVWMFQIQYNSSEDETLIYRIVPASSHHFLLKHLVPGA
DYDLCLLALSPAAGPSDLTATRLLGCAHFSTLPASPLCHALQAHVLGGTLTVAVGGVL
VAALLVFTVALLVRGRGAGNGRLPLKLSHVQSQTNGGPSPTPKAHPPRSPPPRPQRSC
SLDLGDAGCYGYARRLGGAWARRSHSVHGGLLGAGCRGVGGSAERLEESVV"
misc_feature 5..178
/gene="LRFN4"
/gene_synonym="MGC3103"
/note="IGcam; Region: Immunoglobulin domain cell adhesion
molecule (cam) subfamily"
/db_xref="CDD:cd00931"
misc_feature 302..511
/gene="LRFN4"
/gene_synonym="MGC3103"
/note="fn3; Region: Fibronectin type III domain"
/db_xref="CDD:pfam00041"
BASE COUNT 207 a 426 c 430 g 223 t
ORIGIN
1 cgcgcctacc atgcactggg tcggtcctga cgaccggttg gttggcaact cctcccgagc
61 ccgggctttc cccaacggga ccttagagat tggggtgacc ggcgctgggg acgctggggg
121 ctacacctgc atcgccacca accctgctgg tgaggccaca gcccgagtag aactgcgggt
181 gctggccttg ccccatggtg ggaacagcag tgccgagggg ggccgccccg ggccctcgga
241 catcgccgcc tccgctcgca ctgctgccga gggtgagggg acgctggagt ctgagccagc
301 cgtgcaggtg acggaggtga ccgccacctc agggctggtg agctggggtc ccgggcggcc
361 agccgaccca gtgtggatgt tccaaatcca gtacaacagc agcgaagatg agaccctcat
421 ctaccggatt gtcccagcct ccagccacca cttcctgctg aagcacctcg tccccggcgc
481 tgactatgac ctctgcctgc tggccttgtc accggccgct gggccctctg acctcacggc
541 caccaggctg ctgggctgtg cccatttctc cacgctgccg gcctcgcccc tgtgccacgc
601 cctgcaggcc cacgtgctgg gcgggaccct gaccgtggcc gtggggggtg tgctggtggc
661 tgccttactg gtcttcactg tggccttgct ggttcggggc cggggggccg gaaatggccg
721 cctccccctc aagctcagcc acgtccagtc ccagaccaat ggaggcccca gccccacacc
781 caaggcccac ccgccgcgga gccccccgcc ccggccgcag cgcagctgct ctctggacct
841 gggagatgcc gggtgctacg gttatgccag gcgcctggga ggagcttggg cccgacggag
901 ccactctgtg catggggggc tgctcggggc agggtgccgg ggggtaggag gcagcgccga
961 gcggctggaa gagagtgtgg tgtgatggac gggcagcttc ctgtgtgctc caagggatga
1021 gcctcgtggg gcagagggcc cggggccgcc gcctggcctg ggagtccctc cctggttttt
1081 attctcagta cctcaggctc ccctgtgtac ttggaggggc agggagccct ttcctcggtt
1141 ctggcctcca gaccagggta agggcaggcc cctccaacag gtgctcacag ccaccgaggc
1201 aggggctgca gccacccact gggagtcttg tttttattta taataaaatt gttggggaca
1261 cctcaaaaaa aaaaaaaaaa aaaaaa
//