LOCUS BC000184 2332 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens PRP3 pre-mRNA processing factor 3 homolog (S.
cerevisiae), mRNA (cDNA clone MGC:2026 IMAGE:3351519), complete
cds.
ACCESSION BC000184
VERSION BC000184.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2332)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2332)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Sep 16, 2003 this sequence version replaced BC000184.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: i Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4758555.
FEATURES Location/Qualifiers
source 1..2332
/db_xref="H-InvDB:HIT000029415"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:2026 IMAGE:3351519"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2332
/gene="PRPF3"
/gene_synonym="HPRP3"
/gene_synonym="HPRP3P"
/gene_synonym="PRP3"
/gene_synonym="Prp3p"
/db_xref="GeneID:9129"
/db_xref="HGNC:HGNC:17348"
/db_xref="MIM:607301"
CDS 50..2101
/gene="PRPF3"
/gene_synonym="HPRP3"
/gene_synonym="HPRP3P"
/gene_synonym="PRP3"
/gene_synonym="Prp3p"
/codon_start=1
/product="PRP3 pre-mRNA processing factor 3 homolog (S.
cerevisiae)"
/protein_id="AAH00184.1"
/db_xref="GeneID:9129"
/db_xref="HGNC:HGNC:17348"
/db_xref="MIM:607301"
/translation="MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDK
KKAADHLKPFLDDSTLRFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEIS
KESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQL
SFISPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLA
LKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTH
RMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGK
FEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDS
YIIPNGFDLTEENPKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRR
QTRREAQKELQEKVRLGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQ
KAHEEANAARKLTAEQRKVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQ
LYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAV
KKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLEST
D"
BASE COUNT 734 a 528 c 576 g 494 t
ORIGIN
1 ggtgtagtat tgagtcctgt ttgagctatt gttctctctt tcctgaaaaa tggcactgtc
61 aaagagggag ctggatgagc tgaaaccatg gatagagaag acagtgaaga gggtcctggg
121 tttctcagag cctacggtgg tcacagcagc attgaactgt gtggggaagg gcatggacaa
181 gaagaaggca gccgatcatc tgaaaccttt tcttgatgat tctactctcc gatttgtgga
241 caaactgttt gaggctgtgg aggaaggccg aagctctagg cattccaagt ctagcagtga
301 caggagcaga aaacgagagc taaaggaggt gtttggtgat gactctgaga tctctaaaga
361 atcatcagga gtaaagaagc gacgaatacc ccgttttgag gaggtggaag aagagccaga
421 ggtgatccct gggcctccat cagagagccc tggcatgctg actaagctcc agatcaaaca
481 gatgatggag gcagcaacac gacaaatcga ggagaggaaa aaacagctga gcttcattag
541 cccccctaca cctcagccaa agactccttc ttcctcccaa ccagaacgac ttcctattgg
601 caacactatt cagccctccc aggctgccac tttcatgaat gatgccattg agaaggcaag
661 gaaagcagct gaactgcaag ctcgaatcca agcccagctg gcactgaagc caggactcat
721 cggcaatgcc aacatggtgg gcctggctaa tctccatgcc atgggcattg ctcccccgaa
781 ggtggagtta aaagaccaaa cgaaacctac accactgatc ctggatgagc aagggcgcac
841 tgtagatgca acaggcaagg agattgagct gacacaccgc atgcctactc tgaaagccaa
901 tattcgtgct gtgaagaggg aacaattcaa gcaacaacta aaggaaaagc catcagaaga
961 catggaatcc aatacctttt ttgacccccg agtctccatt gccccttccc agcgccagag
1021 acgcactttt aaattccatg acaagggcaa atttgagaag attgctcagc gattacggac
1081 aaaggctcaa ctggagaagc tacaggcaga gatttcacaa gcagctcgaa aaacaggcat
1141 ccatacttcg actaggcttg ccctcattgc tcctaagaag gagctaaagg aaggagatat
1201 tcctgaaatt gagtggtggg actcttacat aatccccaat ggctttgatc ttacagagga
1261 aaatcccaag agagaagatt attttggaat cacaaatctt gttgaacatc cagcccagct
1321 caatcctcca gttgacaatg acacaccagt tactctggga gtatatctta ccaagaagga
1381 acagaaaaaa cttcggagac aaacaaggag ggaagcacag aaggaactac aagaaaaagt
1441 caggctgggc ctgatgcctc ctccagaacc caaagtgaga atttctaatt tgatgcgagt
1501 attaggaaca gaagctgttc aagaccccac gaaggtagaa gcccacgtca gagctcagat
1561 ggcaaaaaga cagaaagcgc atgaagaggc caacgctgcc cgaaaactca cagcagaaca
1621 gagaaaggtc aagaaaatta aaaagcttaa agaagacatt tcacaggggg tacacatatc
1681 tgtatataga gttcgaaatt tgagcaaccc agccaagaag ttcaagattg aagccaatgc
1741 tgggcaactg tacctgacag gggtggtggt actgcacaag gatgtcaacg tggtagtagt
1801 ggaagggggc cccaaggccc agaagaaatt taagcgtctt atgctgcatc ggataaagtg
1861 ggatgaacag acatctaaca caaagggaga tgatgatgag gagtctgatg aggaagctgt
1921 gaagaaaacc aacaaatgtg tactagtctg ggagggtaca gccaaagacc ggagctttgg
1981 agagatgaag tttaaacagt gtcctacaga gaacatggct cgtgagcatt tcaaaaagca
2041 tggggctgaa cactactggg accttgcgct gagtgaatct gtgttagagt ccactgattg
2101 agactactgc aagcccttgc ctctcctccc ttgcctttgt ctcttcagtc ctctcactta
2161 ttctatttcc caaccccctc ccacttgttt gtgtgatctc agaactgtgc caagcagaca
2221 ctgggacaaa gggagaatat cttgctcccc tcctgagtca gcctggtgtt gccctttatt
2281 ccccttatgt gcatatgatt aaagagttat ttttaaaaaa aaaaaaaaaa aa
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