LOCUS BC000178 1665 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens potassium channel modulatory factor 1, mRNA (cDNA
clone MGC:5354 IMAGE:3048124), complete cds.
ACCESSION BC000178
VERSION BC000178.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1665)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1665)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Feb 23, 2001 this sequence version replaced BC000178.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 3 Row: p Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46852177.
FEATURES Location/Qualifiers
source 1..1665
/db_xref="H-InvDB:HIT000029409"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:5354 IMAGE:3048124"
/tissue_type="Cervix, carcinoma"
/clone_lib="NIH_MGC_12"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1665
/gene="KCMF1"
/gene_synonym="DEBT91"
/gene_synonym="DKFZP434L1021"
/gene_synonym="FIGC"
/gene_synonym="PCMF"
/gene_synonym="ZZZ1"
/db_xref="GeneID:56888"
/db_xref="HGNC:HGNC:20589"
CDS 144..1289
/gene="KCMF1"
/gene_synonym="DEBT91"
/gene_synonym="DKFZP434L1021"
/gene_synonym="FIGC"
/gene_synonym="PCMF"
/gene_synonym="ZZZ1"
/codon_start=1
/product="potassium channel modulatory factor 1"
/protein_id="AAH00178.1"
/db_xref="GeneID:56888"
/db_xref="HGNC:HGNC:20589"
/translation="MSRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTT
RHTTDHPMQCILTRVDFDLYYGGEAFSVEQPQSFTCPYCGKMGYTETSLQEHVTSEHA
ETSTEVICPICAALPGGDPNHVTDDFAAHLTLEHRAPRDLDESSGVRHVRRMFHPGRG
LGGPRARRSNMHFTSSSTGGLSSSQSSYSPSNREAMDPIAELLSQLSGVRRSAGGQLN
SSGPSASQLQQLQMQLQLERQHAQAARQQLETARNATRRTNTSSVTTTITQSTATTNI
ANTESSQQTLQNSQFLLTRLNDPKMSETERQSMESERADRSLFVQELLLSTLVREESS
SSDEDDRGEMADFGAMGCVDIMPLDVALENLNLKESNKGNEPPPPPL"
BASE COUNT 468 a 379 c 390 g 428 t
ORIGIN
1 cgctcccctg cccaccccgc ccccgcggcc gagcccggga gtcgagtggg agtcggccgg
61 ccggcgcggg cagcgccggg accccgcggg ggacactgca gccggagccc gggaggggcc
121 gcgccgccac cgtctgaact aggatgtccc gacatgaagg tgtcagctgt gatgcatgtt
181 taaaaggaaa ttttcgaggt cgcagatata agtgtttaat ttgctacgat tacgatcttt
241 gtgcatcttg ttatgaaagt ggtgcaacaa caacaaggca tacaactgac cacccaatgc
301 agtgcatatt aacaagggta gattttgatt tatactatgg tggggaagct ttctctgtag
361 agcagccaca gtcttttact tgtccctatt gtggaaaaat gggctatacg gagacatctc
421 ttcaagaaca tgttacttct gaacatgcag aaacatcaac agaagtgatt tgtccaatat
481 gtgcagcgtt acctggaggc gatcctaatc atgtcacgga tgactttgca gctcatctta
541 cacttgaaca cagagcccct agagatttag atgaatcgag tggtgttcga catgtacgta
601 gaatgtttca ccctggccgg ggattaggag gtcctcgtgc tcgtagatca aacatgcact
661 ttactagcag ttctactggt ggactttctt cttctcagag ttcatattct ccaagcaata
721 gggaagccat ggatcctata gctgagcttt tatctcagtt atcaggagtg agacgttctg
781 caggaggaca gcttaattcc tctggccctt ccgcttctca gttacaacaa ctgcagatgc
841 agctgcagct agaacggcag catgcccagg cagcacggca acaactggag accgcacgca
901 acgcaacccg gcgtactaac acaagcagtg tcaccactac aatcacacaa tccacagcaa
961 caaccaacat agctaataca gaaagcagtc agcagactct acagaattcc cagtttcttt
1021 taacaaggtt gaatgatcct aaaatgtctg aaacggagcg ccagtccatg gaaagcgagc
1081 gtgcagaccg cagcctgttt gtccaagagc tccttctgtc cactttagtg cgtgaagaga
1141 gctcatcctc agatgaggat gatcgggggg agatggcaga ttttggtgct atgggctgtg
1201 tagatattat gcctttagat gttgctttag aaaacctaaa tttaaaagag agtaataaag
1261 gaaatgagcc tccaccacct cctctttgat gacatcccaa ttcgcagaca atgtcctctg
1321 tgctgtattt gccaatgaaa gtggacaaca actatcttgg gtttgtttgg tgattgtaat
1381 ttcaggtctg tcactcttgt tacattgtgt acattcaaaa ggaagagaga aaatatatat
1441 gataatcatt tccacttaac taatttttac ttctagcagg taaatgtagg tagcagtgca
1501 ggggtgatct ctgcttcctg taccttgaca tgcaaaaggc tctcctaata ctccacattc
1561 aaactgaaga ggaaaattga aatctctaat gaagctgctg tgtgtattta tgaatattaa
1621 tgaataaaaa ctgcttggat ggtttacctt aaaaaaaaaa aaaaa
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