LOCUS BC000121 2292 bp mRNA linear HUM 06-JAN-2006
DEFINITION Homo sapiens chromosome 17 open reading frame 53, mRNA (cDNA clone
MGC:3130 IMAGE:3352851), complete cds.
ACCESSION BC000121
VERSION BC000121.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2292)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2292)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 6 Row: g Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31543178.
FEATURES Location/Qualifiers
source 1..2292
/db_xref="H-InvDB:HIT000029361"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3130 IMAGE:3352851"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2292
/gene="C17orf53"
/gene_synonym="FLJ11594"
/gene_synonym="MGC3130"
/db_xref="GeneID:78995"
/db_xref="HGNC:HGNC:28460"
/db_xref="IMGT/GENE-DB:28460"
/db_xref="MIM:28460"
CDS 122..1687
/gene="C17orf53"
/gene_synonym="FLJ11594"
/gene_synonym="MGC3130"
/codon_start=1
/product="C17orf53 protein"
/protein_id="AAH00121.1"
/db_xref="GeneID:78995"
/db_xref="HGNC:HGNC:28460"
/db_xref="IMGT/GENE-DB:28460"
/db_xref="MIM:28460"
/translation="MACSLQKLFAVEEEFEDEDFLSAVEDAENRFTGSLPVNAGRLRP
VSSRPQETVQAQSSRLLLLHPTAPSEALGLPDLDLCLPASSTPSADSRPSCIGAAPLR
PVSTSSSWIGNQRRVTVTEVLREPARPQSSALHPLLTFESQQQQVGGFEGPEQDEFDK
VLASMELEEPGMELECGVSSEAIPILPAQQREGSVLAKKARVVDLSGSCQKGPVPAIH
KAGIMSAQDESLDPVIQCRTPRPPLRPGAVGHLPVPTALTVPTQQLHWEVCPQRSPVQ
ALQPLQAARGTIQSSPQNRFPCQPFQSPSSWLSGKAHLPRPRTPNSSCSTPSRTSSGL
FPRIPLQPQAPVSSIGSPVGTPKGPQGALQTPIVTNHLVQLVTAASRTPQQPTHPSTR
AKTRRFPGPAGILPHQAALKQLPRNKVPNMAVMIKSLTRSTMDASVVFKDPTGEMQGT
VHRLLLETCQNELKPGSVLLLKQIGVFSPSLRNHYLNVTPNNLVHIYSPDSGDGSFLK
PSQPFPKMTWMDS"
BASE COUNT 494 a 706 c 592 g 500 t
ORIGIN
1 gcccggaagc actgtccctc ggagtccgag acttccacct gggtcgtgtc caaggccccg
61 gcgactcccc ggactcgggg tgccgggcca acctccccgc cgaggcccac ccgccgtcgc
121 tatggcgtgc agtttgcaga agctgtttgc tgtggaagag gagtttgaag atgaggattt
181 cttgtctgct gtggaggatg cagagaaccg gtttactggc tcactgcctg tgaatgctgg
241 gcgcctgaga cctgtctctt ctaggccaca ggagactgtg caggcacagt cctccaggct
301 gctgctgtta caccccactg ctccctcaga ggctttgggc ctgccagact tggacctctg
361 cctccctgcc tccagcacgc ccagtgctga cagccgtcca tcatgcatag gagcagctcc
421 cctaaggcct gtctctactt ccagcagctg gattggcaat cagagaagag tgacagtgac
481 agaagtgctc agagagccag caagacctca gtcctcagcc ttacaccccc tactcacctt
541 tgagagccaa cagcagcaag ttggtggctt tgaggggcct gaacaagacg aatttgataa
601 agtcctggca agcatggagt tggaggagcc tggcatggag ctggaatgtg gagtcagcag
661 tgaggccata ccaatcctgc ctgcccagca gcgggagggt tcagtattgg ctaaaaaagc
721 ccgggtagtt gatctgagtg gatcttgcca gaaggggcct gtgcctgcca tccacaaagc
781 gggtatcatg tccgcccagg atgagtctct agatcctgtc atccaatgta ggactccacg
841 accccccttg agacctggtg ctgtgggtca ccttcctgtt ccaactgcct taacagttcc
901 cactcagcaa ctccactggg aagtctgtcc gcaacgctcc cctgttcaag cacttcagcc
961 tctccaagct gctagaggga ccattcagag cagccctcaa aatcgtttcc cttgtcagcc
1021 attccagtct ccaagttcct ggttaagtgg caaagctcat ttacccagac ctcgaactcc
1081 caactcaagc tgttctactc cctcaaggac tagctctgga ttatttcctc ggataccctt
1141 acaaccgcaa gctccagtgt cttccattgg gtctcctgtt ggtaccccaa aaggtcccca
1201 gggagctctg cagacaccca tagtcaccaa ccacctggtg cagctagtca ctgctgccag
1261 ccggacaccc cagcagccca cccatccctc cacccgagcc aaaactcgcc gtttccctgg
1321 cccagctggg atcctgcctc accaggcagc cctgaagcag cttcctagga acaaggtccc
1381 caacatggcg gtgatgatca agtccctgac tcggagcaca atggacgcca gtgtggtttt
1441 caaggacccc acgggagaga tgcaggggac ggtgcacagg ttgctgctgg agacgtgcca
1501 gaatgagctg aagcctggct cagtgctgct gctgaagcag attggagtgt tttctccttc
1561 acttcgaaat cactacctca acgtgacacc caacaacctg gtccatattt acagcccgga
1621 ttctggggat gggagcttcc tcaagccatc tcagcccttc cccaagatga cctggatgga
1681 ctcctgagtg agcttcctga agacttcttc tgtgggacca gtagttgaga ctgccccaac
1741 gcaggacaac ccaccatgag caggcagctc tgggcacgtg tctggtcaca tccaaggggg
1801 agaagaaggc cagcatgatt ggagagtgga cacagccggg gggcttctgt ggttgctccc
1861 accctgggtg ttttccctga gagccccctc atctctgcgc tgccctcact ttgggccttc
1921 ctttgccgtt ggcaccagaa tccggccgga gactggctct ccagccaaca agaaaggcct
1981 gtcacccttg ccttgggtgt ccctctcctg cctcagctta attttagagg atattgggcc
2041 tggttttctt gtcccttcat accctagtcc ctggacagct gaggagatga aaggagccac
2101 accacaacaa tggcggcctg cccctccaca caggggagaa gcacgctcag gcttcctctg
2161 ctttgtctct tcagacctgt ggttgctctg ctcatccatg cccaaggttc ccaggtgcag
2221 gacagaggtg tggcctattg taccttgttc tgaaataaag catctcctgc ttaaaaaaaa
2281 aaaaaaaaaa aa
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