LOCUS BC000081 2845 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens plakophilin 3, mRNA (cDNA clone MGC:3235
IMAGE:3504300), complete cds.
ACCESSION BC000081
VERSION BC000081.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2845)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2845)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000081.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: o Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..2845
/db_xref="H-InvDB:HIT000029329"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3235 IMAGE:3504300"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2845
/gene="PKP3"
/db_xref="GeneID:11187"
/db_xref="HGNC:HGNC:9025"
/db_xref="MIM:605561"
CDS 77..2470
/gene="PKP3"
/codon_start=1
/product="plakophilin 3"
/protein_id="AAH00081.1"
/db_xref="GeneID:11187"
/db_xref="HGNC:HGNC:9025"
/db_xref="MIM:605561"
/translation="MQDGNFLLSALQPEAGVCSLALPSDLQLDRRGAEGPEAERLRAA
RVQEQVRARLLQLGQQPRHNGAAEPEPEAETARGTSRGQYHTLQAGFSSRSQGLSGDK
TSGFRPIAKPAYSPASWSSRSAVDLSCSRRLSSAHNGGSAFGAAGYGGAQPTPPMPTR
PVSFHERGGVGSRADYDTLSLRSLRLGPGGLDDRYSLVSEQLEPAATSTYRAFAYERQ
ASSSSSRAGGLDWPEATEVSPSRTIRAPAVRTLQRFQSSHRSRGVGGAVPGAVLEPVA
RAPSVRSLSLSLADSGHLPDVHGFNSYGSHRTLQRLSSGFDDIDLPSAVKYLMASDPN
LQVLGAAYIQHKCYSDAAAKKQARSLQAVPRLVKLFNHANQEVQRHATGAMRNLIYDN
ADNKLALVEENGIFELLRTLREQDDELRKNVTGILWNLSSSDHLKDRLARDTLEQLTD
LVLSPLSGAGGPPLIQQNASEAEIFYNATGFLRNLSSASQATRQKMRECHGLVDALVT
SINHALDAGKCEDKSVENAVCVLRNLSYRLYDEMPPSALQRLEGRGRRDLAGAPPGEV
VGCFTPQSRRLRELPLAADALTFAEVSKDPKGLEWLWSPQIVGLYNRLLQRCELNRHT
TEAAAGALQNITAGDRRWAGVLSRLALEQERILNPLLDRVRTADHHQLRSLTGLIRNL
SRNARNKDEMSTKVVSHLIEKLPGSVGEKSPPAEVLVNIIAVLNNLVVASPIAARDLL
YFDGLRKLIFIKKKRDSPDSEKSSRAASSLLANLWQYNKLHRDFRAKGYRKEDFLGP"
BASE COUNT 541 a 917 c 956 g 431 t
ORIGIN
1 ggcctcgagg gacaggacgt gaagatagtt gggtttggag gcggccgcca ggcccaggcc
61 cggtggacct gccgccatgc aggacggtaa cttcctgctg tcggccctgc agcctgaggc
121 cggcgtgtgc tccctggcgc tgccctctga cctgcagctg gaccgccggg gcgccgaggg
181 gccggaggcc gagcggctgc gggcagcccg cgtccaggag caggtccgcg cccgcctctt
241 gcagctggga cagcagccgc ggcacaacgg ggccgctgag cccgagcctg aggccgagac
301 tgccagaggc acatccaggg ggcagtacca caccctgcag gctggcttca gctctcgctc
361 tcagggcctg agtggggaca agacctcggg cttccggccc atcgccaagc cggcctacag
421 cccagcctcc tggtcctccc gctccgccgt ggatctgagc tgcagtcgga ggctgagttc
481 agcccacaat gggggcagcg cctttggggc cgctgggtac gggggtgccc agcccacccc
541 tcccatgccc accaggcccg tgtccttcca tgagcgcggt ggggttggga gccgggccga
601 ctatgacaca ctctccctgc gctcgctgcg gctggggccc gggggcctgg acgaccgcta
661 cagcctggtg tctgagcagc tggagcccgc ggccacctcc acctacaggg cctttgcgta
721 cgagcgccag gccagctcca gctccagccg ggcagggggg ctggactggc ccgaggccac
781 tgaggtttcc ccgagccgga ccatccgtgc ccctgccgtg cggaccctgc agcgattcca
841 gagcagccac cggagccgcg gggtaggcgg ggcagtgccg ggggccgtcc tggagccagt
901 ggctcgagcg ccatctgtgc gcagcctcag cctcagcctg gctgactcgg gccacctgcc
961 ggacgtgcat gggttcaaca gctacggtag ccaccgaacc ctgcagagac tcagcagcgg
1021 ttttgatgac attgacctgc cctcagcagt caagtacctc atggcttcag accccaacct
1081 gcaggtgctg ggagcggcct acatccagca caagtgctac agcgatgcag ccgccaagaa
1141 gcaggcccgc agccttcagg ccgtgcctag gctggtgaag ctcttcaacc acgccaacca
1201 ggaagtgcag cgccatgcca caggtgccat gcgcaacctc atctacgaca acgctgacaa
1261 caagctggcc ctggtggagg agaacgggat cttcgagctg ctgcggacac tgcgggagca
1321 ggatgatgag cttcgcaaaa atgtcacagg gatcctgtgg aacctttcat ccagcgacca
1381 cctgaaggac cgcctggcca gagacacgct ggagcagctc acagacctgg tgttgagccc
1441 cctgtcgggg gctgggggtc cccccctcat ccagcagaac gcctcggagg cggagatctt
1501 ctacaacgcc accggcttcc tcaggaacct cagctcagcc tctcaggcca ctcgccagaa
1561 gatgcgggag tgccacgggc tggtggacgc cctggtcacc tctatcaacc acgccctgga
1621 cgcgggcaaa tgcgaggaca agagcgtgga gaacgcggtg tgcgtcctgc ggaacctgtc
1681 ctaccgcctc tacgacgaga tgccgccgtc cgcgctgcag cggctggagg gtcgcggccg
1741 cagggacctg gcgggggcgc cgccgggaga ggtcgtgggc tgcttcacgc cgcagagccg
1801 gcggctgcgc gagctgcccc tcgccgccga tgcgctcacc ttcgcggagg tgtccaagga
1861 ccccaagggc ctcgagtggc tgtggagccc ccagatcgtg gggctgtaca accggctgct
1921 gcagcgctgc gagctcaacc ggcacacgac ggaggcggcc gccggggcgc tgcagaacat
1981 cacggcaggc gaccgcaggt gggcgggggt gctgagccgc ctggccctgg agcaggagcg
2041 tattctgaac cccctgctag accgtgtcag gaccgccgac caccaccagc tgcgctcact
2101 gactggcctc atccgaaacc tgtctcggaa cgctaggaac aaggacgaga tgtccacgaa
2161 ggtggtgagc cacctgatcg agaagctgcc aggcagcgtg ggtgagaagt cgcccccagc
2221 cgaggtgctg gtcaacatca tagctgtgct caacaacctg gtggtggcca gccccatcgc
2281 tgcccgagac ctgctgtatt ttgacggact ccgaaagctc atcttcatca agaagaagcg
2341 ggacagcccc gacagtgaga agtcctcccg ggcagcatcc agcctcctgg ccaacctgtg
2401 gcagtacaac aagctccacc gtgactttcg ggcgaagggc tatcggaagg aggacttcct
2461 gggcccatag gtgaagcctt ctggaggaga aggtgacgtg gcccagcgtc caagggacag
2521 actcagctcc aggctgcttg gcagcccagc ctggaggaga aggctaatga cggaggggcc
2581 cctcgctggg gcccctgtgt gcatctttga gggtcctggg ccaccaggag gggcagggtc
2641 ttatagctgg ggacttggct tccgcagggc agggggtggg gcagggctca aggctgctct
2701 ggtgtatggg gtggtgaccc agtcacattg gcagaggtgg gggttggctg tggcctggca
2761 gtatcttggg atagccagca ctgggaataa agatggccat gaacagtcaa aaaaaaaaaa
2821 aaaaaaaaaa aaaaaaaaaa aaaaa
//