LOCUS BC000017 2164 bp mRNA linear HUM 24-JUL-2006
DEFINITION Homo sapiens Paf1, RNA polymerase II associated factor, homolog (S.
cerevisiae), mRNA (cDNA clone MGC:898 IMAGE:3504227), complete cds.
ACCESSION BC000017
VERSION BC000017.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2164)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2164)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000017.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: e Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 42476168.
FEATURES Location/Qualifiers
source 1..2164
/db_xref="H-InvDB:HIT000029283"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:898 IMAGE:3504227"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2164
/gene="PAF1"
/gene_synonym="F23149_1"
/gene_synonym="FLJ11123"
/gene_synonym="PD2"
/db_xref="GeneID:54623"
/db_xref="HGNC:HGNC:25459"
CDS 176..1771
/gene="PAF1"
/gene_synonym="F23149_1"
/gene_synonym="FLJ11123"
/gene_synonym="PD2"
/codon_start=1
/product="Paf1, RNA polymerase II associated factor,
homolog (S. cerevisiae)"
/protein_id="AAH00017.1"
/db_xref="GeneID:54623"
/db_xref="HGNC:HGNC:25459"
/translation="MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPF
DPKFITYPFDQNRFVQYKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDP
ADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVK
QQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPC
AQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQE
EEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETRVRLSK
RRAKAGVQSGTNALLVVKHRDMNEKELEAQEARKAQLENHEPEEEEEEEMETEEKEAG
GSDEEQEKGSSSEKEGSEDEHSGSESEREEGDRDEASDKSGSGEDESSEDEARAARDK
EEIFGSDADSEDDADSDDEDRGQAQGGSDNDSDSGSNGGGQRSRSHSRSASPFPSGSE
HSAQEDGSEAAASDSSEADSDSD"
BASE COUNT 588 a 559 c 603 g 414 t
ORIGIN
1 ctgagtctcg ctggagctct tctcgcccgc ccacctcatc tcaacccact ttccgcgggg
61 agcggcgcca agctgggcct tcctcggatc aggcgtcccc tgaagtcggc acgcccctct
121 gcgtccccct tcggtcccgc taggaccccg tccgggctgc cgtcgcctcg tcgctatggc
181 gcccaccatc cagacccagg cccagcggga ggatggccac aggcccaatt cccaccggac
241 tctgcctgag aggtctggag tggtctgccg agtcaagtac tgcaatagcc tccctgatat
301 ccccttcgac cccaagttca tcacctaccc cttcgaccag aacaggttcg tccagtacaa
361 agccacttcc ttggagaaac agcacaaaca tgacctcctg actgagccag acctgggggt
421 caccatcgat ctcatcaatc ctgacaccta ccgcatcgac cccaatgttc ttctagatcc
481 agctgatgag aaacttttgg aagaggagat tcaggccccc accagctcca agagatccca
541 gcagcacgcg aaggtggtgc catggatgcg aaagacagag tacatctcca ctgagttcaa
601 ccgttatggc atctccaatg agaagcctga ggtcaagatt ggggtttctg tgaagcagca
661 gtttaccgag gaagaaatat acaaagacag ggatagccag atcacagcca ttgagaagac
721 ttttgaggat gcccagaaat caatctcaca gcattacagc aaaccccgag tcacaccggt
781 ggaggtcatg cctgtcttcc cagactttaa gatgtggatc aatccatgtg ctcaggtgat
841 ctttgactca gacccagccc ccaaggacac gagtggtgca gctgcgttgg agatgatgtc
901 tcaggccatg attaggggca tgatggatga ggaagggaac cagtttgtgg cctatttcct
961 gcctgtagaa gagacgttga agaaacgaaa gcgggaccag gaggaggaga tggactatgc
1021 accagatgat gtgtatgact acaaaattgc tcgggagtac aactggaacg tgaagaacaa
1081 agctagcaag ggctatgagg aaaactactt cttcatcttc cgagagggtg acggggttta
1141 ctacaatgag ttggaaacca gggtccgcct tagtaagcgc cgggccaagg ctggggttca
1201 gtcaggcacc aacgccctgc ttgtggtcaa acatcgggac atgaatgaga aggaactgga
1261 agctcaggag gcacggaagg cccagctaga aaaccacgaa ccggaggagg aagaggaaga
1321 ggagatggag acagaagaga aagaagctgg gggctcagat gaggagcagg agaagggcag
1381 cagcagtgag aaggagggca gtgaagatga gcactcgggc agcgagagtg aacgggagga
1441 aggtgacagg gacgaggcca gtgacaagag tggcagtggt gaggacgaga gcagcgagga
1501 tgaggcccgg gctgcccgtg acaaagagga gatctttggc agtgatgctg attctgagga
1561 cgatgccgac tctgatgatg aggacagagg acaggcccaa ggtggcagtg acaatgattc
1621 agacagcggc agcaatgggg gtggccagcg gagccggagc cacagccgca gcgccagtcc
1681 cttccccagt ggcagcgagc actcggccca ggaggatggc agtgaagctg cagcttctga
1741 ttccagtgaa gctgatagtg acagtgactg agtcccaggg cattcagggc tggttcagac
1801 accattattg tgagcagcaa agcacttttc tagtggtctg tttgtgagcc tttcacttgt
1861 ttgttcccca cccccaaacc tttgctgtta ataaagtcaa cttctcttta cttcccctcc
1921 cagcccctat gatgtcattc agcccagcac atacctcccg caacccccag gtgctcaagg
1981 atcttggctt gaggcttaga aacacaggcc agaggcaggg ccaatggttt cccacaaaat
2041 gtagcacaac gaaggtcaga attcgttttt tttgtttgtt tttttttttt ccaaaataag
2101 cccagaccat taaacaagtg aaactccaac aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2161 aaaa
//