LOCUS BC000001 1500 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens chitinase domain containing 1, mRNA (cDNA clone
MGC:3234 IMAGE:3504261), complete cds.
ACCESSION BC000001
VERSION BC000001.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1500)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1500)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-NOV-2000) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 19, 2003 this sequence version replaced BC000001.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Institute for Systems Biology
http://www.systemsbiology.org
contact: amadan@systemsbiology.org
Anup Madan, Jessica Fahey, Erin Helton, Mark Ketteman, Anuradha
Madan, Stephanie Rodrigues, Amy Sanchez and Michelle Whiting
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 7 Row: k Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24431993.
FEATURES Location/Qualifiers
source 1..1500
/db_xref="H-InvDB:HIT000029270"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:3234 IMAGE:3504261"
/tissue_type="Placenta, choriocarcinoma"
/clone_lib="NIH_MGC_21"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1500
/gene="CHID1"
/gene_synonym="FLJ42707"
/gene_synonym="MGC3234"
/db_xref="GeneID:66005"
/db_xref="HGNC:HGNC:28474"
/db_xref="IMGT/GENE-DB:28474"
/db_xref="MIM:28474"
CDS 168..1349
/gene="CHID1"
/gene_synonym="FLJ42707"
/gene_synonym="MGC3234"
/codon_start=1
/product="CHID1 protein"
/protein_id="AAH00001.1"
/db_xref="GeneID:66005"
/db_xref="HGNC:HGNC:28474"
/db_xref="IMGT/GENE-DB:28474"
/db_xref="MIM:28474"
/translation="MRTLFNLLWLALACSPVHTTLSKSDAKKAASKTLLEKSQFSDKP
VQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSK
FTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDF
RNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLSQKRVGLIHMLTHLAEALHQ
ARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQPGPNAPLS
WVRACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVVGARYIQTLKDHRPRMVW
DSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSIWELGQGLDYFYDL
L"
BASE COUNT 352 a 417 c 440 g 291 t
ORIGIN
1 ccggcctccc tgacatgcag atttccaccc agaagacaga gaaggagcca gtggtcatgg
61 aatgggctgg ggtcaaagac tgggtgcctg ggagctgagg cagccaccgt ttcagcctgg
121 ccagccctct ggaccccgag gttggaccct actgtgacac acctaccatg cggacactct
181 tcaacctcct ctggcttgcc ctggcctgca gccctgttca cactaccctg tcaaagtcag
241 atgccaaaaa agccgcctca aagacgctgc tggagaagag tcagttttca gataagccgg
301 tgcaagaccg gggtttggtg gtgacggacc tcaaagctga gagtgtggtt cttgagcatc
361 gcagctactg ctcggcaaag gcccgggaca gacactttgc tggggatgta ctgggctatg
421 tcactccatg gaacagccat ggctacgatg tcaccaaggt ctttgggagc aagttcacac
481 agatctcacc cgtctggctg cagctgaaga gacgtggccg tgagatgttt gaggtcacgg
541 gcctccacga cgtggaccaa gggtggatgc gagctgtcag gaagcatgcc aagggcctgc
601 acatagtgcc tcggctcctg tttgaggact ggacttacga tgatttccgg aacgtcttag
661 acagtgagga tgagatagag gagctgagca agaccgtggt ccaggtggca aagaaccagc
721 atttcgatgg cttcgtggtg gaggtctgga accagctgct aagccagaag cgcgtgggcc
781 tcatccacat gctcacccac ttggccgagg ctctgcacca ggcccggctg ctggccctcc
841 tggtcatccc gcctgccatc acccccggga ccgaccagct gggcatgttc acgcacaagg
901 agtttgagca gctggccccc gtgctggatg gtttcagcct catgacctac gactactcta
961 cagcgcatca gcctggccct aatgcacccc tgtcctgggt tcgagcctgc gtccaggtcc
1021 tggacccgaa gtccaagtgg cgaagcaaaa tcctcctggg gctcaacttc tatggtatgg
1081 actacgcgac ctccaaggat gcccgtgagc ctgttgtcgg ggccaggtac atccagacac
1141 tgaaggacca caggccccgg atggtgtggg acagccaggc ctcagagcac ttcttcgagt
1201 acaagaagag ccgcagtggg aggcacgtcg tcttctaccc aaccctgaag tccctgcagg
1261 tgcggctgga gctggcccgg gagctgggcg ttggggtctc tatctgggag ctgggccagg
1321 gcctggacta cttctacgac ctgctctagg tgggcattgc ggcctccgcg gtggacgtgt
1381 tcttttctaa gccatggagt gagtgagcag gtgtgaaata caggcctcca ctccgtttgc
1441 tgtgaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//