LOCUS       KB822139              797053 bp    DNA     linear   CON 12-APR-2013
DEFINITION  Staphylococcus aureus M1277 genomic scaffold acung-supercont1.4,
            whole genome shotgun sequence.
ACCESSION   KB822139 AIZC01000000
VERSION     KB822139.1
DBLINK      BioProject: PRJNA88769
            BioSample: SAMN00809076
KEYWORDS    WGS.
SOURCE      Staphylococcus aureus M1277
  ORGANISM  Staphylococcus aureus M1277
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 797053)
  AUTHORS   Feldgarden,M., Cosimi,L., Nicol,R., Calderwood,M., Huang,S.,
            Onderdonk,A., Walker,B., Young,S.K., Zeng,Q., Gargeya,S.,
            Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M.,
            Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A.,
            Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J.,
            McCowan,C., Murphy,C., Neiman,D., Pearson,M., Priest,M.,
            Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J.,
            Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     The Genome Sequence of Staphylococcus aureus M1277
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 797053)
  AUTHORS   Feldgarden,M., Cosimi,L., Nicol,R., Calderwood,M., Huang,S.,
            Onderdonk,A., Walker,B., Young,S.K., Zeng,Q., Gargeya,S.,
            Fitzgerald,M., Haas,B., Abouelleil,A., Alvarado,L., Arachchi,H.M.,
            Berlin,A.M., Chapman,S.B., Dewar,J., Goldberg,J., Griggs,A.,
            Gujja,S., Hansen,M., Howarth,C., Imamovic,A., Larimer,J.,
            McCowan,C., Murphy,C., Neiman,D., Pearson,M., Priest,M.,
            Roberts,A., Saif,S., Shea,T., Sisk,P., Sykes,S., Wortman,J.,
            Nusbaum,C. and Birren,B.
  CONSRTM   The Broad Institute Genome Sequencing Platform, The Broad Institute
            Genome Sequencing Center for Infectious Disease
  TITLE     Direct Submission
  JOURNAL   Submitted (10-DEC-2012) Broad Institute of MIT and Harvard, 7
            Cambridge Center, Cambridge, MA 02142, USA
COMMENT     Please be aware that the annotation is done automatically with
            little or no manual curation.
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: allpaths v. R41977
            Assembly Name         :: Stap_aure_M1277_V1
            Genome Coverage       :: 142.0x
            Sequencing Technology :: Illumina
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797053
                     /organism="Staphylococcus aureus M1277"
                     /mol_type="genomic DNA"
                     /submitter_seqid="acung-supercont1.4"
                     /strain="M1277"
                     /db_xref="taxon:1158483"
     assembly_gap    14189..15378
                     /estimated_length=1190
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    17838..17937
                     /estimated_length=100
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    158002..158741
                     /estimated_length=740
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    290975..291074
                     /estimated_length=100
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    375146..375295
                     /estimated_length=150
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    596364..596463
                     /estimated_length=100
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    597563..597842
                     /estimated_length=280
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
     assembly_gap    757101..758030
                     /estimated_length=930
                     /gap_type="within scaffold"
                     /linkage_evidence="paired-ends"
CONTIG      join(AIZC01000020.1:1..14188,gap(1190),AIZC01000021.1:1..2459,
            gap(100),AIZC01000022.1:1..140064,gap(740),
            AIZC01000023.1:1..132233,gap(100),AIZC01000024.1:1..84071,gap(150),
            AIZC01000025.1:1..221068,gap(100),AIZC01000026.1:1..1099,gap(280),
            AIZC01000027.1:1..159258,gap(930),AIZC01000028.1:1..39023)
//