LOCUS GU385353 8255 bp DNA linear VRL 25-JUL-2016 DEFINITION Equine infectious anemia virus isolate FDDV-5 tat (s1) and gag protein (gag) genes, complete cds; pol polyprotein (pol) gene, partial cds; and S2 (s2), truncated envelope polyprotein (env), and Rev (s3) genes, complete cds. ACCESSION GU385353 VERSION GU385353.1 KEYWORDS . SOURCE Equine infectious anemia virus ORGANISM Equine infectious anemia virus Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus. REFERENCE 1 (bases 1 to 8255) AUTHORS Wang,X., Wang,S., Lin,Y., Jiang,C., Ma,J., Zhao,L., Lv,X., Wang,F., Shen,R., Kong,X. and Zhou,J. TITLE Genomic comparison between attenuated Chinese equine infectious anemia virus vaccine strains and their parental virulent strains JOURNAL Arch. Virol. 156 (2), 353-357 (2011) PUBMED 21136127 REFERENCE 2 (bases 1 to 8255) AUTHORS Wang,X., Qi,X., Wang,S., Jiang,C., Lin,Y., Ma,J., Zhao,L., Lv,X., Shen,R., Wang,F. and Zhou,J. TITLE Direct Submission JOURNAL Submitted (03-JAN-2010) Veterinary Medicine, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, No.427 Maduan Street, Nangang District, Harbin, Heilongjiang 150001, China FEATURES Location/Qualifiers source 1..8255 /organism="Equine infectious anemia virus" /proviral /mol_type="genomic DNA" /isolate="FDDV-5" /db_xref="taxon:11665" /geo_loc_name="China" repeat_region <1..328 /rpt_type=long_terminal_repeat gene 368..5282 /gene="s1" CDS join(368..463,5139..5282) /gene="s1" /codon_start=1 /product="tat" /protein_id="ADK35791.1" /translation="MLNLADHRIPRTVEENLQKSSGGVTGHNTGRQESPPVSYHCQLC FLRSLGIDYLDSSLKKKNKQRQKAIREGRPPQYLL" gene 469..1929 /gene="gag" CDS 469..1929 /gene="gag" /codon_start=1 /product="gag protein" /protein_id="ADK35792.1" /translation="MGDSLTWSKALKKLEKVTVQGSQKLTSGNCNWALNLVDLFHDTN FCKEKDWQLRDVIPLLEDVSQTLSGQEREAFEKTWWAIAAVKMGLQINTVNDAKSTFS ILKAKFERKTANTTKKQSEPEEEYPIMIDGAGNRNFRPLTPRGYTTWVNTIQQNNLLN EASVNLFGILSVDCTSEEMNAFLDVVPGQAGQKQVLLDNLDKIAEEWDRRHPMPNPPL VAPPQGPIPMTARFIRGLGVPRERQMEPAFDQFRQTYRQWIIEAMTEGIKIMIGKPKA QNIRQGPKEPYPEFVDRLLSQIKSEGHPADITKFLTDTLTIQNANDECKNAMRHLRPE DTLEEKMYACRDIGTMKQKMALLAKALQTGLAGSMKGGIFKGGPLGAKQTCYNCGKPG HLSSQCKAPKVCFKCKQPGHFSKQCRNAPKNGKQGAQGRPQKQTFPVQKGSMGKTQME EKLQGTLYPDLSQMKQEYKIREEENQEDLNLNSLWE" gene <1722..5126 /gene="pol" CDS <1722..5126 /gene="pol" /codon_start=1 /product="pol polyprotein" /protein_id="ADK35793.1" /translation="KCSKKRETRGSGEAPETNFPCAEGVNGQNTNGGETARDLISRFE SDETGVQDQGRGKSGGSQSEQFVGVTYNLEKRPTTIVLINDTPLNVLLDTGADTSVLT IAHYNRLKYRGRKQQGTGIVGVGGNVETFSTPVTVKKKGKQIKTRMLVADIPVTILGR DILQELGAQLIMAQLSKEITPREIKLKTGTVGPKVPQWPLTKEKLLGAKEIVRKLLDE GKISEASDDNPYNSPIFVIKKKSGKWRLLQDLRELNKVVQVGTEISRGLPHPGGLIKC NHMTVLDIGDAYFTIPLDPKFRQYTAFTVPSINHQEPDKRYVWNCLPQGFVLSPYVYQ KTLQDILQAFRERHPDVQLYQYMDDLFIGSNESKRQHKELVEELRAILLEKGFEMPED KLQGEAPYNWLGYQLSPGNWKVQKMQLELVKEPTLNDVQKLMGNITWMSSGVPGLTVK QIAATTKGCLDLNQKVVWTEEAQKELEENNKKIQEAQGLQYYNPEEEVICEIEITKNY EATYIIKQSQGILWAGKKIMRANKGWSAAKNLMLLLQHVATGSIVRIGTCPKFKVPFT KEQVKWEMEKGWYYSWLPDMIYSHQVVHDDWRLKLVEQPTSGITIYTDGGKQNEEGVA AYVTSNGKTKQKRLGPVTHQTAERIAIQMALEDTEETLVNIVTVSYYCWKNITEGLGL EGPDSPWWPIIQNIRAKEMVYFAWVPGHKGIYGNQLADEATKITEEIMLAYQGTQIKE KRDEDAGFDLCIPYDMIIPVSETKVIPTDVKIQVPHKCFGWVTGKSSMAKQGLLINGG IIGEGYTGEIQVICTNIGKSHMKLREGQKFAQLIILQHRSNDKQIWDENKTSQRGDKG FGSTGIFWVENIQEAQDEHENWHTSPKILAKRYGLPLTVAKQITQECPHCTKQGSGPA GCVMRSPNHWQADCTHLENRIIMTFVESNSGYIHATLLSKENALCTSLAILEWVRLFS PKSLHTDNGTNFVAESVANLLKFLKVTHTTGIPYHPESQGIVERANRTLKEKIKSHRE NTQTLEAALQLALITCNKGRESMGGQTPWEVFITNQAQTIREELLLQQAQSSKKFCFY KIPGEHNWKGPTRVLWKGDGAVVVNDEKKGIIAVPLTRTKLLIRPN" gene 5293..5499 /gene="s2" CDS 5293..5499 /gene="s2" /codon_start=1 /product="S2" /protein_id="ADK35794.1" /translation="MGLFGKGVTWSALHSMGVSQGEYQPLSPNKQNQQTHRKGIIWYI NPIVIMIAIKKKWQRQETQDTKKK" gene 5319..7448 /gene="env" CDS 5319..7448 /gene="env" /codon_start=1 /product="truncated envelope polyprotein" /protein_id="ADK35795.1" /translation="MVSIAFYGGIPGGISTPITQQTESTDTQKGDHMVYQPYCYNDSY KEEMAEARDTRYQEEMNRKEDKEDKRRNNWWKIGMFLLCLLGTTGGFLWWYERQQHSY YIGLVTIGGRLNGSGMTSAIECWGSFPGCRSFTNYFSYETNRTVSRDNNTATLLDAYQ REVTNIYRTSCVDSDHCQEYKCKQVQLEKNSNNIIMNNCSNNSCEEFWGFSWLECNQT ENAITILVPEVEMQQSKNTWIPKGCKKTWARVKHCPMDLLYGINRIRMCVQPPFFCFK QNDTSNNTGILSNCGPLVFLGILEDNKAAIQNGSCTVHRTNINRPDYSGFYQVPIFYI CNLTGLQSCNNGSIISIIMSEPNNVQYLLCNTSNTNSTSNANVSCVVQSFGVIGQAHV ALPRKNKRLQSPKFAQYNCTINNKTELRQWQLVKTSGITPLPISSTANTGLVRHKRDF GISAIIAAIVAATAIAASATMSYIALTEVNKLDSVQNHTFKVENNTINSMELTEEQIH ILYAMVLQTHADVQLLKEQQKIEETFNLIGCIERSHTFCHTGHPWNESWGQLNDSTQW DDWVNKMENLNHDILTTLHTARNNLEQSMITFNTPDSIAQFGKNIWSHVANWIPGLGA SIIKYIVLLLLVYVLLTSAPKILRGLLATMSGAGSSASRYLRKRYHHRHASRGDIWAQ VQYHAYLADETHGSGDKSNMRKFSRNN" gene 5460..7657 /gene="s3" CDS join(5460..5550,7254..7657) /gene="s3" /codon_start=1 /product="Rev" /protein_id="ADK35796.1" /translation="MAEARDTRYQEEMNRKEDKEDKRRNNWWKIDPQRPLGNDEWCRI LRQSLPEEKVPSQTCIARRHLGPGPVSCIPGRRDSWIRGQVQHAEVLQEQLKWRIRGV QQTAKELEKVNKEIWRELQYTRRQHGDYGSFCDYRRREEERWGESSPRVLKPGDSKRR RKHL" repeat_region 7929..>8255 /rpt_type=long_terminal_repeat BASE COUNT 2925 a 1315 c 1820 g 2195 t ORIGIN 1 tgtgggatta atataagatt cttataagtg aatatgaaag ttgctgatgc tctcataacc 61 tcatgtaacc cagatgacta gctgatgact agctcatgtt gctaggcaac tgaactgtaa 121 taaccttttg ttcctcatta tagttccgct tttgtgacgc gttaacttcc tgtttttaca 181 gtatataagt gcttgtattc tgacatttgg tcgctcagat tctgcggtct gagtcccttc 241 tctgctgggc tagactctag ccttggtaat aaatataatt ctctgctaag tccctgttct 301 tagtttgtct tgttttcaag acctaacagc tggcgcccga acagggacct gagggcgcag 361 accctgcctg ctgaacctgg ctgatcatag gatccctagg acagtagagg agaacttaca 421 gaagtcttct ggaggtgtta ctggccacaa cacaggaaga caggtaagat gggagactct 481 ttgacgtgga gcaaagcgct caagaagtta gagaaggtga cggtacaagg gtctcaaaag 541 ctaactagtg gtaactgtaa ttgggcgctg aatttggtgg acttattcca tgacaccaat 601 ttttgtaaag aaaaggactg gcaattaagg gacgttattc cattgttgga ggacgtttcc 661 cagacgttgt caggacaaga gagagaggca tttgaaaaaa cctggtgggc aatagctgcc 721 gttaagatgg gcttacaaat taatactgtg aatgatgcaa aatcaacatt ttctatatta 781 aaagccaagt ttgaaagaaa gactgcaaat actaccaaaa agcagtctga gcccgaggaa 841 gaatacccaa taatgattga tggggctgga aacagaaact ttcggccatt aacacccaga 901 ggatatacta cctgggtaaa tactatacag caaaacaatc tcctaaatga agctagtgta 961 aatctatttg gtattttatc agtagactgt acttctgagg aaatgaatgc atttttggat 1021 gtagtaccag gacaagcagg gcaaaaacaa gtactattgg ataatcttga taagattgca 1081 gaagaatggg atcgtaggca cccgatgcca aatcctccat tagtggcacc accacaaggg 1141 cctattccca tgacagcaag gttcattagg ggattgggag ttcctagaga aagacagatg 1201 gaacctgctt ttgatcagtt tagacaaact tatagacaat ggataataga agcaatgaca 1261 gaggggataa aaataatgat tgggaaacct aaagcgcaaa atattaggca aggacccaaa 1321 gaaccctatc cagagtttgt agacagattg ctgtctcaga taaaaagtga gggacatccg 1381 gctgatataa ctaaattcct gacagacact ttaaccattc agaatgctaa tgatgaatgc 1441 aaaaatgcta tgagacattt gaggccagaa gatacattag aagaaaaaat gtatgcatgt 1501 agagatattg gcactatgaa acaaaaaatg gcattattag ccaaggcact tcaaacagga 1561 ttagctggtt cgatgaaggg aggaatattt aaaggaggac ccttaggggc gaagcagaca 1621 tgttataatt gtggaaaacc aggacatctt tctagtcaat gtaaagcacc taaagtatgt 1681 tttaagtgca aacagccagg acatttctca aaacaatgta gaaatgctcc aaaaaacggg 1741 aaacaagggg ctcaggggag gccccagaaa caaactttcc ctgtgcagaa ggggtcaatg 1801 ggcaaaacac aaatggagga gaaactgcaa gggaccttat atccagattt gagtcagatg 1861 aaacaggagt acaagatcag ggaagaggaa aatcaggagg atctcaatct gaacagtttg 1921 tgggagtaac ttataattta gaaaagagac caactacaat agtcttgatt aatgacacac 1981 ccttaaatgt attattggac acaggagcag acacatcagt actaactatt gcacattata 2041 ataggttaaa gtatagagga agaaaacaac agggtacagg tattgttggg gttggaggta 2101 atgtagagac attttccact cctgttacag tgaaaaagaa aggaaaacaa attaaaacta 2161 gaatgttagt agcagatatc ccagttacta ttttggggcg agatatcctt caggaattag 2221 gcgcacagtt aataatggct caactttcaa aagaaataac cccaagagaa attaaattaa 2281 aaacaggcac agtggggcct aaggttcccc aatggccact tactaaagag aaattgttag 2341 gtgctaaaga aatagtcaga aaattgttgg atgaaggtaa aatatcagaa gccagtgatg 2401 ataatcctta taattctcct atatttgtaa taaaaaagaa atctgggaag tggagattat 2461 tgcaagattt aagagagtta aataaagtgg tacaagtagg aactgaaata tccagagggt 2521 tacctcatcc agggggatta attaaatgta atcatatgac agtattagat attggagatg 2581 catatttcac tataccttta gatccaaagt ttagacaata tacagcattt actgtgccat 2641 ccattaatca tcaggaacca gataaaagat atgtgtggaa ttgcttgcca caaggttttg 2701 tgttaagtcc atacgtatat caaaaaacat tgcaggacat attacaagct tttagagaaa 2761 ggcatccaga tgtacaatta tatcaatata tggatgattt attcattggg agtaatgaat 2821 ctaaaagaca gcataaggaa ctagtagaag aattaagagc tattctttta gaaaagggct 2881 ttgagatgcc tgaggataaa ttgcagggag aggcacccta taattggctg ggatatcaac 2941 ttagtccagg caattggaaa gtacaaaaaa tgcaattaga attggtaaaa gaaccaacat 3001 taaatgatgt acaaaaatta atgggaaata taacatggat gagctcagga gttcctggat 3061 taacagtaaa gcaaatagct gctacaacta aaggatgctt agatttaaat caaaaggtag 3121 tatggacaga agaagcacag aaagaactag aggaaaataa taaaaagatt caggaagctc 3181 agggattgca atattataac ccagaagaag aagtaatctg tgagattgaa attactaaaa 3241 attatgaggc tacttatata ataaaacagt ctcaaggaat attgtgggca ggaaagaaaa 3301 ttatgagggc caataaagga tggtccgcag caaaaaattt aatgttgttg ttacaacatg 3361 tagccacagg aagtattgtt agaattggaa catgtccaaa atttaaagta ccttttacta 3421 aagaacaagt caaatgggaa atggaaaagg ggtggtatta ttcatggcta ccagacatga 3481 tatattcaca tcaagttgtt catgatgatt ggagactgaa attagtagag caaccaacat 3541 ctggtataac gatttacact gatgggggta aacagaatga agaaggagtt gcagcttatg 3601 tgactagtaa tgggaaaact aaacaaaaaa ggttaggacc tgttactcat caaactgctg 3661 agaggatagc aatacaaatg gcattagaag atactgaaga gacactggta aatatagtaa 3721 ctgttagtta ctactgttgg aaaaatatta cagaaggact aggattagaa ggaccagaca 3781 gcccctggtg gccaataatt caaaatatta gggctaaaga aatggtttat tttgcttggg 3841 taccaggtca taaaggaata tatggcaatc aattggcaga tgaggctact aaaataactg 3901 aggaaattat gttagcatat caaggcacac agattaagga aaaaagagat gaagatgcag 3961 ggtttgactt gtgtattcct tatgacatga taatacctgt ctctgagaca aaagttatac 4021 ccacagatgt aaaaatacag gtacctcaca aatgttttgg gtgggtaact ggtaagtcat 4081 cgatggctaa gcaagggtta ttaatcaatg ggggaataat tggtgaaggg tatacaggtg 4141 aaatacaggt aatttgtact aacattggaa agagtcacat gaaactcagg gaaggacaaa 4201 agtttgcaca attaatcata ttacagcatc gatcaaatga taaacaaatc tgggatgaaa 4261 ataaaacatc tcaaagggga gataaagggt ttggaagcac aggtatattt tgggtagaga 4321 atatccaaga ggcacaagat gaacatgaaa actggcatac atctccaaag atattggcaa 4381 aaagatatgg gttaccattg acagtagcta aacagataac tcaagaatgc cctcattgta 4441 ctaaacaagg atctggacca gcaggttgtg taatgagatc tcctaatcat tggcaggctg 4501 attgtacaca tttagaaaac aggataataa tgacatttgt agagtctaat tcaggataca 4561 ttcatgctac tctattgtct aaagaaaatg ccttgtgtac ttcattggct attttggaat 4621 gggtgaggtt attttctcct aaatctttac atacagacaa tggtactaat tttgtggcag 4681 agtcagtagc aaatttgttg aaattcctga aggtgacaca tactacagga ataccttatc 4741 acccagagag ccaaggcatt gtggaaagag caaacaggac attaaaagaa aaaattaaaa 4801 gtcatagaga aaatactcag acacttgaag cagcattaca acttgctctc attacttgta 4861 acaaagggag ggaaagtatg ggaggacaaa ctccatggga agtatttatt actaatcagg 4921 ctcaaacaat acgtgaagaa cttttattac aacaagcaca atcttccaaa aaattttgtt 4981 tttataaaat tcctggtgag cataattgga aggggcccac cagagtgttg tggaaaggtg 5041 atggagcagt agtggtcaat gatgagaaaa aaggaataat tgctgtgcct ttaactagga 5101 ctaaattatt aataagacca aattgagtgt tgtttcagga atcaccacca gtcagctatc 5161 attgtcaact gtgtttcctg agatcattgg gaattgacta ccttgacagc tctctaaaga 5221 agaagaacaa acaaagacag aaggccatca gggagggaag accacctcaa tatctgttat 5281 aaggtttggt gtatgggatt atttggtaaa ggggtaacat ggtcagcatt gcattctatg 5341 ggggtatccc agggggaata tcaaccccta tcacccaaca aacagaatca acagacacac 5401 agaaagggga tcatatggta tatcaaccct attgttataa tgatagctat aaagaagaaa 5461 tggcagaggc aagagacaca agataccaag aagaaatgaa ccggaaagaa gataaagaag 5521 ataaaagaag aaataactgg tggaagatag gtatgttcct attgtgtctg ttagggacca 5581 ctggaggatt cctctggtgg tatgagaggc aacaacattc atattatata ggattggtta 5641 caataggagg tagactaaat ggttcaggaa tgactagtgc catagaatgt tggggttcat 5701 ttcctgggtg taggtcattt actaactatt tcagttatga gactaatagg actgttagta 5761 gagataataa tactgctact ctgttagatg cttatcaaag agaagtaaca aacatataca 5821 ggacatcttg tgtggatagt gatcactgtc aagaatataa atgtaagcaa gtacagttgg 5881 agaagaacag caataacatt ataatgaata attgtagtaa caatagttgt gaagagtttt 5941 gggggtttag ctggttagaa tgtaatcaga cagaaaatgc aataactata ttggtcccag 6001 aagtagaaat gcagcaaagt aaaaacactt ggattccaaa agggtgtaag aaaacttggg 6061 ctagggtaaa acattgtccg atggatttat tatatggtat aaatagaata agaatgtgtg 6121 tccaacctcc attcttttgt ttcaaacaaa atgatacttc taataatact ggtattctca 6181 gtaattgtgg acctttagta tttcttggaa tattggagga caataaggca gcaatacaga 6241 atgggagttg cactgttcac aggacaaata ttaacaggcc tgattatagt ggattttacc 6301 aagtgcctat attttatata tgcaacttga caggacttca gagttgtaat aatggatcaa 6361 taattagtat aattatgtct gagcctaata atgttcaata cttgttatgc aacactagta 6421 ataccaatag taccagtaat gctaatgtct cttgtgtggt acaaagtttt ggagtgatag 6481 gacaggcaca tgtggcgctg cccagaaaaa ataagaggtt acaatctcca aagtttgctc 6541 aatataattg caccataaat aataaaacag aattaaggca atggcaattg gtgaaaacat 6601 caggcatcac tcctttaccc atttcctcta cagctaatac tggattagtc agacacaaga 6661 gagactttgg tatatctgct ataatagctg ccattgtagc tgctactgct attgctgcca 6721 gtgctactat gtcttatatc gctttgacag aagtcaacaa attagatagt gtacaaaatc 6781 atacatttaa agtagagaac aatactatca atagcatgga gttaacagaa gagcaaattc 6841 atatattata tgctatggtc ctccaaacac atgcagatgt tcaattgtta aaagaacaac 6901 aaaagattga ggaaacattt aatttgattg gatgtataga aagatcacat acattttgtc 6961 atactgggca tccctggaat gaatcatggg gtcagctaaa tgattctaca cagtgggatg 7021 actgggtaaa taagatggaa aatttaaatc atgatatatt aacaacactt catactgcta 7081 gaaataatct agaacaatct atgataactt ttaatacacc tgacagtata gcacaatttg 7141 gtaaaaatat ttggagtcat gttgcaaatt ggattcctgg attaggagct tccataatta 7201 aatatatagt gttattatta cttgtatatg tgctactaac ctctgcacct aagatcctca 7261 gaggcctctt ggcaacgatg agtggtgcag gatcctccgc cagtcgctac ctgaggaaaa 7321 ggtaccatca cagacatgca tcgcgaggag acatctgggc ccaggtccag tatcatgcat 7381 acctggcaga cgagactcat ggatcagggg acaagtccaa catgcggaag ttctccagga 7441 acaactgaaa tggcgaatca gaggagtaca acagacggca aaagaattgg aaaaggttaa 7501 taaagagatc tggagagaat tacaatacac acgaagacaa catggggact atgggtcatt 7561 ttgtgactac cgccgccgag aagaagaacg ttggggtgaa tcctcaccaa gggtccttaa 7621 acctggagat tcaaagcgaa ggaggaaaca tctatgactg ttgcattaag gctcaagaag 7681 gaactcttgc tattccttgc tgtggcttcc cactatggct gctttgggga cttataatca 7741 tgttaggacg cttgttggga tatgggcttc ggggaattgc aaaaatcata atgattttgg 7801 ggaagggact aaatgtaata attacagggt taagaaaatt atgtaattat attgggaaaa 7861 tgctaaatcc agctacatct catgtaacaa tgcctcaata tgatgtttag aaaaacaagg 7921 ggggaactgt gggattaata taagattctt ataagtgaat atgaaagttg ctgatgctct 7981 cataacctcg tgtaacccag atgactagct gatgactagc tcatgttgct aggcaactga 8041 actgtaataa ccttttgttc ctcattatag ttccgctttt gtgacgcgtt aacttcctgt 8101 ttttacagta tataagtgct tgtattctga catttggtcg ctcagattct gcggtctgag 8161 tcccttctct gctgggctag actctagcct tggtaataaa tataattctc tgctaagtcc 8221 ctgttcttag tttgtcttgt tttcaagatc taaca //