LOCUS       CH941569                4837 bp    DNA     linear   CON 03-NOV-2015
DEFINITION  Drosophila virilis strain TSC#15010-1051.87 scaffold_4358 genomic
            scaffold, whole genome shotgun sequence.
ACCESSION   CH941569 AANI01000000
VERSION     CH941569.1
DBLINK      BioProject: PRJNA12688
            BioSample: SAMN02953641
KEYWORDS    WGS.
SOURCE      Drosophila virilis
  ORGANISM  Drosophila virilis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila.
REFERENCE   1  (bases 1 to 4837)
  AUTHORS   Clark,A.G., Eisen,M.B., Smith,D.R., Bergman,C.M., Oliver,B.,
            Markow,T.A., Kaufman,T.C., Kellis,M., Gelbart,W., Iyer,V.N.,
            Pollard,D.A., Sackton,T.B., Larracuente,A.M., Singh,N.D.,
            Abad,J.P., Abt,D.N., Adryan,B., Aguade,M., Akashi,H.,
            Anderson,W.W., Aquadro,C.F., Ardell,D.H., Arguello,R.,
            Artieri,C.G., Barbash,D.A., Barker,D., Barsanti,P., Batterham,P.,
            Batzoglou,S., Begun,D., Bhutkar,A., Blanco,E., Bosak,S.A.,
            Bradley,R.K., Brand,A.D., Brent,M.R., Brooks,A.N., Brown,R.H.,
            Butlin,R.K., Caggese,C., Calvi,B.R., Bernardo de Carvalho,A.,
            Caspi,A., Castrezana,S., Celniker,S.E., Chang,J.L., Chapple,C.,
            Chatterji,S., Chinwalla,A., Civetta,A., Clifton,S.W., Comeron,J.M.,
            Costello,J.C., Coyne,J.A., Daub,J., David,R.G., Delcher,A.L.,
            Delehaunty,K., Do,C.B., Ebling,H., Edwards,K., Eickbush,T.,
            Evans,J.D., Filipski,A., Findeiss,S., Freyhult,E., Fulton,L.,
            Fulton,R., Garcia,A.C., Gardiner,A., Garfield,D.A., Garvin,B.E.,
            Gibson,G., Gilbert,D., Gnerre,S., Godfrey,J., Good,R., Gotea,V.,
            Gravely,B., Greenberg,A.J., Griffiths-Jones,S., Gross,S., Guigo,R.,
            Gustafson,E.A., Haerty,W., Hahn,M.W., Halligan,D.L., Halpern,A.L.,
            Halter,G.M., Han,M.V., Heger,A., Hillier,L., Hinrichs,A.S.,
            Holmes,I., Hoskins,R.A., Hubisz,M.J., Hultmark,D., Huntley,M.A.,
            Jaffe,D.B., Jagadeeshan,S., Jeck,W.R., Johnson,J., Jones,C.D.,
            Jordan,W.C., Karpen,G.H., Kataoka,E., Keightley,P.D.,
            Kheradpour,P., Kirkness,E.F., Koerich,L.B., Kristiansen,K.,
            Kudrna,D., Kulathinal,R.J., Kumar,S., Kwok,R., Lander,E.,
            Langley,C.H., Lapoint,R., Lazzaro,B.P., Lee,S.J., Levesque,L.,
            Li,R., Lin,C.F., Lin,M.F., Lindblad-Toh,K., Llopart,A., Long,M.,
            Low,L., Lozovsky,E., Lu,J., Luo,M., Machado,C.A., Makalowski,W.,
            Marzo,M., Matsuda,M., Matzkin,L., McAllister,B., McBride,C.S.,
            McKernan,B., McKernan,K., Mendez-Lago,M., Minx,P.,
            Mollenhauer,M.U., Montooth,K., Mount,S.M., Mu,X., Myers,E.,
            Negre,B., Newfeld,S., Nielsen,R., Noor,M.A., O'Grady,P.,
            Pachter,L., Papaceit,M., Parisi,M.J., Parisi,M., Parts,L.,
            Pedersen,J.S., Pesole,G., Phillippy,A.M., Ponting,C.P., Pop,M.,
            Porcelli,D., Powell,J.R., Prohaska,S., Pruitt,K., Puig,M.,
            Quesneville,H., Ram,K.R., Rand,D., Rasmussen,M.D., Reed,L.K.,
            Reenan,R., Reily,A., Remington,K.A., Rieger,T.T., Ritchie,M.G.,
            Robin,C., Rogers,Y.H., Rohde,C., Rozas,J., Rubenfield,M.J.,
            Ruiz,A., Russo,S., Salzberg,S.L., Sanchez-Gracia,A., Saranga,D.J.,
            Sato,H., Schaeffer,S.W., Schatz,M.C., Schlenke,T., Schwartz,R.,
            Segarra,C., Singh,R.S., Sirot,L., Sirota,M., Sisneros,N.B.,
            Smith,C.D., Smith,T.F., Spieth,J., Stage,D.E., Stark,A.,
            Stephan,W., Strausberg,R.L., Strempel,S., Sturgill,D., Sutton,G.,
            Sutton,G.G., Tao,W., Teichmann,S., Tobari,Y.N., Tomimura,Y.,
            Tsolas,J.M., Valente,V.L., Venter,E., Venter,J.C., Vicario,S.,
            Vieira,F.G., Vilella,A.J., Villasante,A., Walenz,B., Wang,J.,
            Wasserman,M., Watts,T., Wilson,D., Wilson,R.K., Wing,R.A.,
            Wolfner,M.F., Wong,A., Wong,G.K., Wu,C.I., Wu,G., Yamamoto,D.,
            Yang,H.P., Yang,S.P., Yorke,J.A., Yoshida,K., Zdobnov,E., Zhang,P.,
            Zhang,Y., Zimin,A.V., Baldwin,J., Abdouelleil,A., Abdulkadir,J.,
            Abebe,A., Abera,B., Abreu,J., Acer,S.C., Aftuck,L., Alexander,A.,
            An,P., Anderson,E., Anderson,S., Arachi,H., Azer,M.,
            Bachantsang,P., Barry,A., Bayul,T., Berlin,A., Bessette,D.,
            Bloom,T., Blye,J., Boguslavskiy,L., Bonnet,C., Boukhgalter,B.,
            Bourzgui,I., Brown,A., Cahill,P., Channer,S., Cheshatsang,Y.,
            Chuda,L., Citroen,M., Collymore,A., Cooke,P., Costello,M.,
            D'Aco,K., Daza,R., De Haan,G., DeGray,S., DeMaso,C., Dhargay,N.,
            Dooley,K., Dooley,E., Doricent,M., Dorje,P., Dorjee,K., Dupes,A.,
            Elong,R., Falk,J., Farina,A., Faro,S., Ferguson,D., Fisher,S.,
            Foley,C.D., Franke,A., Friedrich,D., Gadbois,L., Gearin,G.,
            Gearin,C.R., Giannoukos,G., Goode,T., Graham,J., Grandbois,E.,
            Grewal,S., Gyaltsen,K., Hafez,N., Hagos,B., Hall,J., Henson,C.,
            Hollinger,A., Honan,T., Huard,M.D., Hughes,L., Hurhula,B.,
            Husby,M.E., Kamat,A., Kanga,B., Kashin,S., Khazanovich,D.,
            Kisner,P., Lance,K., Lara,M., Lee,W., Lennon,N., Letendre,F.,
            LeVine,R., Lipovsky,A., Liu,X., Liu,J., Liu,S., Lokyitsang,T.,
            Lokyitsang,Y., Lubonja,R., Lui,A., MacDonald,P., Magnisalis,V.,
            Maru,K., Matthews,C., McCusker,W., McDonough,S., Mehta,T.,
            Meldrim,J., Meneus,L., Mihai,O., Mihalev,A., Mihova,T.,
            Mittelman,R., Mlenga,V., Montmayeur,A., Mulrain,L., Navidi,A.,
            Naylor,J., Negash,T., Nguyen,T., Nguyen,N., Nicol,R., Norbu,C.,
            Norbu,N., Novod,N., O'Neill,B., Osman,S., Markiewicz,E.,
            Oyono,O.L., Patti,C., Phunkhang,P., Pierre,F., Priest,M.,
            Raghuraman,S., Rege,F., Reyes,R., Rise,C., Rogov,P., Ross,K.,
            Ryan,E., Settipalli,S., Shea,T., Sherpa,N., Shi,L., Shih,D.,
            Sparrow,T., Spaulding,J., Stalker,J., Stange-Thomann,N.,
            Stavropoulos,S., Stone,C., Strader,C., Tesfaye,S., Thomson,T.,
            Thoulutsang,Y., Thoulutsang,D., Topham,K., Topping,I., Tsamla,T.,
            Vassiliev,H., Vo,A., Wangchuk,T., Wangdi,T., Weiand,M.,
            Wilkinson,J., Wilson,A., Yadav,S., Young,G., Yu,Q., Zembek,L.,
            Zhong,D., Zimmer,A., Zwirko,Z., Jaffe,D.B., Alvarez,P.,
            Brockman,W., Butler,J., Chin,C., Gnerre,S., Grabherr,M., Kleber,M.,
            Mauceli,E. and MacCallum,I.
  CONSRTM   Drosophila 12 Genomes Consortium
  TITLE     Evolution of genes and genomes on the Drosophila phylogeny
  JOURNAL   Nature 450 (7167), 203-218 (2007)
   PUBMED   17994087
REFERENCE   2  (bases 1 to 4837)
  AUTHORS   Zimin,A.V., Smith,D.R., Sutton,G. and Yorke,J.A.
  TITLE     Assembly reconciliation
  JOURNAL   Bioinformatics 24 (1), 42-45 (2008)
   PUBMED   18057021
REFERENCE   3  (bases 1 to 4837)
  AUTHORS   Smith,D.R., Tao,W., Saranga,D.J., Brand,A., Ebling,H.,
            Rubenfield,M., Bosak,S., Garvin,B., McKernan,B., McKernan,K.,
            Parisi,M., Stelling,O., Lin,N., David,R., Gustafson,E., Zimin,A.,
            Roberts,M., York,J. and Sutton,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-APR-2006) Agencourt Bioscience Corporation, 500
            Cummings Center Suite 2450, Beverly, MA 01915, USA
REFERENCE   4  (bases 1 to 4837)
  CONSRTM   FlyBase
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2015) FlyBase, Harvard University, Biological
            Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA
COMMENT     This is the CAF1 assembly of the Drosophila virilis genome. It has
            8.0x coverage.
            Annotation was updated in November 2015.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: FlyBase
            Annotation Status   :: Full annotation
            Annotation Version  :: Release 1.03
            Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
            URL                 :: http://flybase.org
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4837
                     /organism="Drosophila virilis"
                     /mol_type="genomic DNA"
                     /strain="TSC#15010-1051.87"
                     /db_xref="taxon:7244"
     gene            7..>1071
                     /gene="Dvir\GJ15401"
                     /locus_tag="Dvir_GJ15401"
                     /gene_synonym="dvir_GLEANR_15720"
                     /gene_synonym="GJ15401"
                     /db_xref="FLYBASE:FBgn0202595"
     mRNA            join(7..44,106..>1071)
                     /gene="Dvir\GJ15401"
                     /locus_tag="Dvir_GJ15401"
                     /gene_synonym="dvir_GLEANR_15720"
                     /gene_synonym="GJ15401"
                     /product="uncharacterized protein"
                     /note="GJ15401-RB; Dvir\GJ15401-RB"
                     /db_xref="FLYBASE:FBtr0435265"
                     /db_xref="FLYBASE:FBgn0202595"
     CDS             112..1071
                     /gene="Dvir\GJ15401"
                     /locus_tag="Dvir_GJ15401"
                     /gene_synonym="dvir_GLEANR_15720"
                     /gene_synonym="GJ15401"
                     /note="GJ15401 gene product from transcript GJ15401-RB;
                     Dvir\GJ15401-PB"
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="KRF85762.1"
                     /db_xref="FLYBASE:FBpp0392253"
                     /db_xref="FLYBASE:FBgn0202595"
                     /translation="MNRPVSGSDFGFQIPLSDGLHTIVDGLEYDETAEAADQQQQQQQ
                     LQQPAADYLPPTYECAMLSATSNGNSNGGDNNLTSMAGRLQHQISSGVGTQQNDSRDE
                     ATYTESIELRLLGQYNSTDTDPYAYAADQRSGSFARGDSLQDTDEAYLKYQKSLLTRS
                     PSYRKSLDRLSQSSGQSQRSLLPSRSLKSEESAMRRHSSGHSLNSISLEQDELLSQQA
                     NLREELLNCDQKELFQFLQEDDELLAKKKTTTSSIKSNLSYISFHNANAGLQALQHWQ
                     WAAGERTADGALRIRQYHTEFREGAGGDQAFDQLAGAQNLHAR"
CONTIG      join(AANI01004373.1:1..4837)
//