LOCUS CH940966 9879 bp DNA linear CON 03-NOV-2015 DEFINITION Drosophila virilis strain TSC#15010-1051.87 scaffold_9685 genomic scaffold, whole genome shotgun sequence. ACCESSION CH940966 AANI01000000 VERSION CH940966.1 DBLINK BioProject: PRJNA12688 BioSample: SAMN02953641 KEYWORDS WGS. SOURCE Drosophila virilis ORGANISM Drosophila virilis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila. REFERENCE 1 (bases 1 to 9879) AUTHORS Clark,A.G., Eisen,M.B., Smith,D.R., Bergman,C.M., Oliver,B., Markow,T.A., Kaufman,T.C., Kellis,M., Gelbart,W., Iyer,V.N., Pollard,D.A., Sackton,T.B., Larracuente,A.M., Singh,N.D., Abad,J.P., Abt,D.N., Adryan,B., Aguade,M., Akashi,H., Anderson,W.W., Aquadro,C.F., Ardell,D.H., Arguello,R., Artieri,C.G., Barbash,D.A., Barker,D., Barsanti,P., Batterham,P., Batzoglou,S., Begun,D., Bhutkar,A., Blanco,E., Bosak,S.A., Bradley,R.K., Brand,A.D., Brent,M.R., Brooks,A.N., Brown,R.H., Butlin,R.K., Caggese,C., Calvi,B.R., Bernardo de Carvalho,A., Caspi,A., Castrezana,S., Celniker,S.E., Chang,J.L., Chapple,C., Chatterji,S., Chinwalla,A., Civetta,A., Clifton,S.W., Comeron,J.M., Costello,J.C., Coyne,J.A., Daub,J., David,R.G., Delcher,A.L., Delehaunty,K., Do,C.B., Ebling,H., Edwards,K., Eickbush,T., Evans,J.D., Filipski,A., Findeiss,S., Freyhult,E., Fulton,L., Fulton,R., Garcia,A.C., Gardiner,A., Garfield,D.A., Garvin,B.E., Gibson,G., Gilbert,D., Gnerre,S., Godfrey,J., Good,R., Gotea,V., Gravely,B., Greenberg,A.J., Griffiths-Jones,S., Gross,S., Guigo,R., Gustafson,E.A., Haerty,W., Hahn,M.W., Halligan,D.L., Halpern,A.L., Halter,G.M., Han,M.V., Heger,A., Hillier,L., Hinrichs,A.S., Holmes,I., Hoskins,R.A., Hubisz,M.J., Hultmark,D., Huntley,M.A., Jaffe,D.B., Jagadeeshan,S., Jeck,W.R., Johnson,J., Jones,C.D., Jordan,W.C., Karpen,G.H., Kataoka,E., Keightley,P.D., Kheradpour,P., Kirkness,E.F., Koerich,L.B., Kristiansen,K., Kudrna,D., Kulathinal,R.J., Kumar,S., Kwok,R., Lander,E., Langley,C.H., Lapoint,R., Lazzaro,B.P., Lee,S.J., Levesque,L., Li,R., Lin,C.F., Lin,M.F., Lindblad-Toh,K., Llopart,A., Long,M., Low,L., Lozovsky,E., Lu,J., Luo,M., Machado,C.A., Makalowski,W., Marzo,M., Matsuda,M., Matzkin,L., McAllister,B., McBride,C.S., McKernan,B., McKernan,K., Mendez-Lago,M., Minx,P., Mollenhauer,M.U., Montooth,K., Mount,S.M., Mu,X., Myers,E., Negre,B., Newfeld,S., Nielsen,R., Noor,M.A., O'Grady,P., Pachter,L., Papaceit,M., Parisi,M.J., Parisi,M., Parts,L., Pedersen,J.S., Pesole,G., Phillippy,A.M., Ponting,C.P., Pop,M., Porcelli,D., Powell,J.R., Prohaska,S., Pruitt,K., Puig,M., Quesneville,H., Ram,K.R., Rand,D., Rasmussen,M.D., Reed,L.K., Reenan,R., Reily,A., Remington,K.A., Rieger,T.T., Ritchie,M.G., Robin,C., Rogers,Y.H., Rohde,C., Rozas,J., Rubenfield,M.J., Ruiz,A., Russo,S., Salzberg,S.L., Sanchez-Gracia,A., Saranga,D.J., Sato,H., Schaeffer,S.W., Schatz,M.C., Schlenke,T., Schwartz,R., Segarra,C., Singh,R.S., Sirot,L., Sirota,M., Sisneros,N.B., Smith,C.D., Smith,T.F., Spieth,J., Stage,D.E., Stark,A., Stephan,W., Strausberg,R.L., Strempel,S., Sturgill,D., Sutton,G., Sutton,G.G., Tao,W., Teichmann,S., Tobari,Y.N., Tomimura,Y., Tsolas,J.M., Valente,V.L., Venter,E., Venter,J.C., Vicario,S., Vieira,F.G., Vilella,A.J., Villasante,A., Walenz,B., Wang,J., Wasserman,M., Watts,T., Wilson,D., Wilson,R.K., Wing,R.A., Wolfner,M.F., Wong,A., Wong,G.K., Wu,C.I., Wu,G., Yamamoto,D., Yang,H.P., Yang,S.P., Yorke,J.A., Yoshida,K., Zdobnov,E., Zhang,P., Zhang,Y., Zimin,A.V., Baldwin,J., Abdouelleil,A., Abdulkadir,J., Abebe,A., Abera,B., Abreu,J., Acer,S.C., Aftuck,L., Alexander,A., An,P., Anderson,E., Anderson,S., Arachi,H., Azer,M., Bachantsang,P., Barry,A., Bayul,T., Berlin,A., Bessette,D., Bloom,T., Blye,J., Boguslavskiy,L., Bonnet,C., Boukhgalter,B., Bourzgui,I., Brown,A., Cahill,P., Channer,S., Cheshatsang,Y., Chuda,L., Citroen,M., Collymore,A., Cooke,P., Costello,M., D'Aco,K., Daza,R., De Haan,G., DeGray,S., DeMaso,C., Dhargay,N., Dooley,K., Dooley,E., Doricent,M., Dorje,P., Dorjee,K., Dupes,A., Elong,R., Falk,J., Farina,A., Faro,S., Ferguson,D., Fisher,S., Foley,C.D., Franke,A., Friedrich,D., Gadbois,L., Gearin,G., Gearin,C.R., Giannoukos,G., Goode,T., Graham,J., Grandbois,E., Grewal,S., Gyaltsen,K., Hafez,N., Hagos,B., Hall,J., Henson,C., Hollinger,A., Honan,T., Huard,M.D., Hughes,L., Hurhula,B., Husby,M.E., Kamat,A., Kanga,B., Kashin,S., Khazanovich,D., Kisner,P., Lance,K., Lara,M., Lee,W., Lennon,N., Letendre,F., LeVine,R., Lipovsky,A., Liu,X., Liu,J., Liu,S., Lokyitsang,T., Lokyitsang,Y., Lubonja,R., Lui,A., MacDonald,P., Magnisalis,V., Maru,K., Matthews,C., McCusker,W., McDonough,S., Mehta,T., Meldrim,J., Meneus,L., Mihai,O., Mihalev,A., Mihova,T., Mittelman,R., Mlenga,V., Montmayeur,A., Mulrain,L., Navidi,A., Naylor,J., Negash,T., Nguyen,T., Nguyen,N., Nicol,R., Norbu,C., Norbu,N., Novod,N., O'Neill,B., Osman,S., Markiewicz,E., Oyono,O.L., Patti,C., Phunkhang,P., Pierre,F., Priest,M., Raghuraman,S., Rege,F., Reyes,R., Rise,C., Rogov,P., Ross,K., Ryan,E., Settipalli,S., Shea,T., Sherpa,N., Shi,L., Shih,D., Sparrow,T., Spaulding,J., Stalker,J., Stange-Thomann,N., Stavropoulos,S., Stone,C., Strader,C., Tesfaye,S., Thomson,T., Thoulutsang,Y., Thoulutsang,D., Topham,K., Topping,I., Tsamla,T., Vassiliev,H., Vo,A., Wangchuk,T., Wangdi,T., Weiand,M., Wilkinson,J., Wilson,A., Yadav,S., Young,G., Yu,Q., Zembek,L., Zhong,D., Zimmer,A., Zwirko,Z., Jaffe,D.B., Alvarez,P., Brockman,W., Butler,J., Chin,C., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E. and MacCallum,I. CONSRTM Drosophila 12 Genomes Consortium TITLE Evolution of genes and genomes on the Drosophila phylogeny JOURNAL Nature 450 (7167), 203-218 (2007) PUBMED 17994087 REFERENCE 2 (bases 1 to 9879) AUTHORS Zimin,A.V., Smith,D.R., Sutton,G. and Yorke,J.A. TITLE Assembly reconciliation JOURNAL Bioinformatics 24 (1), 42-45 (2008) PUBMED 18057021 REFERENCE 3 (bases 1 to 9879) AUTHORS Smith,D.R., Tao,W., Saranga,D.J., Brand,A., Ebling,H., Rubenfield,M., Bosak,S., Garvin,B., McKernan,B., McKernan,K., Parisi,M., Stelling,O., Lin,N., David,R., Gustafson,E., Zimin,A., Roberts,M., York,J. and Sutton,G. TITLE Direct Submission JOURNAL Submitted (06-APR-2006) Agencourt Bioscience Corporation, 500 Cummings Center Suite 2450, Beverly, MA 01915, USA REFERENCE 4 (bases 1 to 9879) CONSRTM FlyBase TITLE Direct Submission JOURNAL Submitted (02-NOV-2015) FlyBase, Harvard University, Biological Laboratories, 16 Divinity Ave., Cambridge, MA 02138, USA COMMENT This is the CAF1 assembly of the Drosophila virilis genome. It has 8.0x coverage. Annotation was updated in November 2015. ##Genome-Annotation-Data-START## Annotation Provider :: FlyBase Annotation Status :: Full annotation Annotation Version :: Release 1.03 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline URL :: http://flybase.org ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9879 /organism="Drosophila virilis" /mol_type="genomic DNA" /strain="TSC#15010-1051.87" /db_xref="taxon:7244" gap 1745..2150 /estimated_length=406 gap 6994..7046 /estimated_length=53 gap 7993..8017 /estimated_length=25 CONTIG join(AANI01010034.1:1..1744,gap(406),AANI01010035.1:1..4843, gap(53),AANI01010036.1:1..946,gap(25),AANI01010037.1:1..1862) //