LOCUS Y13228 5962 bp DNA linear BCT 18-APR-2005 DEFINITION Mycobacterium bovis BCG DNA for ribosomal S10 operon. ACCESSION Y13228 VERSION Y13228.1 KEYWORDS ribosomal S10 operon; rplB gene; rplC gene; rplD gene; rplP gene; rplV gene; rplW gene; rpmC gene; rpsC gene; rpsQ gene; rpsS gene; rpsX gene. SOURCE Mycobacterium tuberculosis variant bovis BCG ORGANISM Mycobacterium tuberculosis variant bovis BCG Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex. REFERENCE 1 AUTHORS Sander P., Prammananan, Meier, Frischkorn, Boettger. TITLE The role of ribosomal RNAs in macrolide resistance JOURNAL Mol. Microbiol. 26(3), 469-480(1997). PUBMED 9402018 REFERENCE 2 (bases 1 to 5962) AUTHORS Sanders P. JOURNAL Submitted (15-MAY-1997) to the INSDC. P. Sanders, Medizinische Hochschule Hannover, Institut fuer Medizinische Mikrobiologie, Carl-Neuberg-Str 1, D-30623 Hannover, FRG FEATURES Location/Qualifiers source 1..5962 /organism="Mycobacterium tuberculosis variant bovis BCG" /mol_type="genomic DNA" /db_xref="taxon:33892" CDS 269..574 /transl_table=11 /gene="rpsX" /db_xref="GOA:P0A5X1" /db_xref="InterPro:IPR001848" /db_xref="InterPro:IPR018268" /db_xref="InterPro:IPR027486" /db_xref="InterPro:IPR036838" /db_xref="UniProtKB/Swiss-Prot:P0A5X1" /protein_id="CAA73671.1" /translation="MAGQKIRIRLKAYDHEAIDASARKIVETVVRTGASVVGPVPLPT EKNVYCVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKTVDALMRIDLPASVDVNIQ" CDS 591..1244 /transl_table=11 /gene="rplC" /db_xref="GOA:P60441" /db_xref="InterPro:IPR000597" /db_xref="InterPro:IPR009000" /db_xref="InterPro:IPR019926" /db_xref="InterPro:IPR019927" /db_xref="UniProtKB/Swiss-Prot:P60441" /protein_id="CAA73672.1" /translation="MARKGILGTKLGMTQVFDESNRVAPVTVVKAGPNVVTRIRTPER DGYSAVQLAYGEISPRKVNKPLTGQYTAAGVNPRRYLAELRLDDSDAATEYQVGQELT AEIFADGSYVDVTGTSKGKGFAGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARV FKGTRMAGRMGNDRVTVLNLLVHKVDAENGVLLIKGAVPGRTGGLVMVRSAIKRGEK" CDS 1244..1915 /transl_table=11 /gene="rplD" /db_xref="GOA:P60728" /db_xref="InterPro:IPR002136" /db_xref="InterPro:IPR013005" /db_xref="InterPro:IPR023574" /db_xref="UniProtKB/Swiss-Prot:P60728" /protein_id="CAA73673.1" /translation="MAAQEQKTLKIDVKTPAGKVDGAIELPAELFDVPANIALMHQVV TAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPR DYSQRTPKKMIAAALRGALSDRARNGRIHAITELVEGQNPSTKSARAFLVSLTERKQV LVVIGRSDEGRRESVRNLPGVHILAPDQLNTYDVLRADDVVFSVEALNAYIAANTTTS EEVSA" CDS 1915..2217 /transl_table=11 /gene="rplW" /db_xref="GOA:O06046" /db_xref="InterPro:IPR001014" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR012678" /db_xref="InterPro:IPR013025" /db_xref="UniProtKB/Swiss-Prot:O06046" /protein_id="CAA73674.1" /translation="MATLADPRDIILAPVISEKSYGLLDDNVYTFLVRPDSNKTQIKI AVEKIFGVKVASVNTANRQGKRKRTRTGYGKRKSTKRAIVTLAPGSRPIDLFGAPA" CDS 2310..3152 /transl_table=11 /gene="rplB" /db_xref="GOA:O06047" /db_xref="InterPro:IPR002171" /db_xref="InterPro:IPR005880" /db_xref="InterPro:IPR008991" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR014722" /db_xref="InterPro:IPR014726" /db_xref="InterPro:IPR022666" /db_xref="InterPro:IPR022669" /db_xref="InterPro:IPR022671" /db_xref="UniProtKB/Swiss-Prot:O06047" /protein_id="CAA73675.1" /translation="MAIRKYKPTTPGRRGASVSYFAEITRSTPEKSLVRPLHGRGGRN AHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNPKVAHIEYDPNRTARIALLHYLDGEK RYIIAPNGLSQGDVVESGANADIKPGNNLPLRNIPAGTLIHAVELRPGGGAKLARSAG SSIQLLGKEASYASLRMPSGEIRRVDVRCRATVGEVGNAEQANINWGKAGRMRWKAKR PSVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGKPEGRTRNANKSSNKFIVRRRRTGK KHSR" CDS 3193..3474 /transl_table=11 /gene="rpsS" /db_xref="GOA:P0A5X5" /db_xref="InterPro:IPR002222" /db_xref="InterPro:IPR005732" /db_xref="InterPro:IPR020934" /db_xref="InterPro:IPR023575" /db_xref="UniProtKB/Swiss-Prot:P0A5X5" /protein_id="CAA73676.1" /translation="MPRSLKKGPFVDEHLLKKVDVQNEKNTKQVIKTWSRRSTIIPDF IGHTFAVHDGRKHVPVFVTESMVGHKLGEFAPTRTFKGHIKDDRKSKRR" CDS 3471..4064 /transl_table=11 /gene="rplV" /db_xref="GOA:P61180" /db_xref="InterPro:IPR001063" /db_xref="InterPro:IPR005727" /db_xref="InterPro:IPR018260" /db_xref="InterPro:IPR036394" /db_xref="UniProtKB/Swiss-Prot:P61180" /protein_id="CAA73677.1" /translation="MTAATKATEYPSAVAKARFVRVSPRKARRVIDLVRGRSVSDALD ILRWAPQAASGPVAKVIASAAANAQNNGGLDPATLVVATVYADQGPTAKRIRPRAQGR AFRIRRRTSHITVVVESRPAKDQRSAKSSRARRTEASKAASKVGATAPAKKAAAKAPA KKAPASSGVKKTPAKKAPAKKAPAKASETSAAKGGSD" CDS 4064..4888 /transl_table=11 /gene="rpsC" /db_xref="GOA:P0A5X7" /db_xref="InterPro:IPR001351" /db_xref="InterPro:IPR004044" /db_xref="InterPro:IPR004087" /db_xref="InterPro:IPR005704" /db_xref="InterPro:IPR009019" /db_xref="InterPro:IPR015946" /db_xref="InterPro:IPR018280" /db_xref="InterPro:IPR036419" /db_xref="UniProtKB/Swiss-Prot:P0A5X7" /protein_id="CAA73678.1" /translation="MGQKINPHGFRLGITTDWKSRWYADKQYAEYVKEDVAIRRLLSS GLERAGIADVEIERTRDRVRVDIHTARPGIVIGRRGTEADRIRADLEKLTGKQVQLNI LEVKNPESQAQLVAQGVAEQLSNRVAFRRAMRKAIQSAMRQPNVKGIRVQCSGRLGGA EMNRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELAAAA PAGADRPRRERPSGTRPRRSGASGTTATGTDAGRPAGGEEAAPDAAAPVEAQSTES" CDS 4892..5308 /transl_table=11 /gene="rplP" /db_xref="GOA:O06049" /db_xref="InterPro:IPR000114" /db_xref="InterPro:IPR016180" /db_xref="InterPro:IPR020798" /db_xref="InterPro:IPR036920" /db_xref="UniProtKB/Swiss-Prot:O06049" /protein_id="CAA73679.1" /translation="MLIPRKVKHRKQHHPRQRGIASGGTTVNFGDYGIQALEHAYVTN RQIESARIAINRHIKRGGEVWINIFPGRPLTKKPAETRMGSGKGSPEWWVANVKPGRV LFELSYPNEGVARAALTRAIHKLPIKARIITREEQF" CDS 5308..5535 /transl_table=11 /gene="rpmC" /db_xref="GOA:O06050" /db_xref="InterPro:IPR001854" /db_xref="InterPro:IPR018254" /db_xref="InterPro:IPR036049" /db_xref="UniProtKB/Swiss-Prot:O06050" /protein_id="CAA73680.1" /translation="MAVGVSPGELRELTDEELAERLRESKEELFNLRFQMATGQLNNN RRLRTVRQEIARIYTVSARTRTGSGGDWARW" CDS 5545..5955 /transl_table=11 /gene="rpsQ" /db_xref="GOA:O06051" /db_xref="InterPro:IPR000266" /db_xref="InterPro:IPR012340" /db_xref="InterPro:IPR019979" /db_xref="InterPro:IPR019984" /db_xref="UniProtKB/Swiss-Prot:O06051" /protein_id="CAA73681.1" /translation="MAEAKTGAKAAPRVAKAAKAAPKKAAPNDAEAIGAANAANVKGP KHTPRTPKPRGRRKTRIGYVVSDKMQKTIVVELEDRMRHPLYGKIIRTTKKVKAHDED SVAGIGDRVSLMETRPLSATKRWRLVEILEKAKP" BASE COUNT 1245 a 1860 c 1996 g 861 t ORIGIN 1 tgcgttctgg ccgggcatac gaccagcgcc cacacgggcg cgtccggtcc cacccttgaa 61 gcgcgacgat tttcggcctt gaaattgatc gcgacaaggc tgtgtgcggg cgacacgccc 121 gagcgcgggg ccggtggacc tacgacaggt aaacagcggc gcagtattcg gcgcaacgct 181 agatcggtcc agaaggaccg ggtcgatcgg cgcgccgggg agcaccggac ccggatacgg 241 gctcgagtgg gagtgaggta ggagaagcgt ggcgggacag aagatccgca tcaggttgaa 301 ggcctacgac catgaggcca ttgacgcttc ggcgcgcaag atcgtcgaaa ccgtcgtccg 361 caccggtgcc agcgtcgtag ggccggtgcc gctaccgact gagaagaacg tgtattgcgt 421 catccgctca ccgcataagt acaaggactc gcgggagcac ttcgagatgc gcacacacaa 481 gcggttgatc gacatcatcg atcccacgcc gaagaccgtt gacgcgctca tgcgcatcga 541 ccttccggcc agcgtcgacg tcaacatcca gtaggagatt ggacagagca atggcacgaa 601 agggcattct cggtaccaag ctgggcatga cgcaggtatt cgacgaaagc aacagagtag 661 caccggtgac cgtggtcaag gccgggccca acgtggtaac ccgcatccgc acgcccgaac 721 gcgacggtta tagcgccgtg cagctggcct atggcgagat cagcccacgc aaggtcaaca 781 agccgctgac aggtcagtac accgccgccg gcgtcaaccc acgccgatac ctggcggagc 841 tgcggctgga cgactcggat gccgcgaccg agtaccaggt tgggcaagag ttgaccgcgg 901 agatcttcgc cgatggcagc tacgtcgatg tgacgggtac ctccaagggc aaaggtttcg 961 ccggcaccat gaagcggcac ggcttccgcg gtcagggcgc cagtcacggt gcccaggcgg 1021 tgcaccgccg tccgggctcc atcggcggat gtgccacgcc ggcgcgggtg ttcaagggca 1081 cccggatggc cgggcggatg ggcaatgacc gggtgaccgt tcttaacctt ttggtgcata 1141 aggtcgatgc cgagaacggc gtgctgctga tcaagggtgc ggttcctggc cgcaccggtg 1201 gactggtcat ggtccgcagt gcgatcaaac gaggtgagaa gtgatggctg cgcaagagca 1261 gaagacactc aaaatcgacg tcaagacgcc ggcgggcaag gtcgacggcg ctatcgagct 1321 gccggccgag ctgttcgacg tcccggccaa catcgcgctg atgcaccagg tggtcaccgc 1381 ccagcgggcg gcggcacgcc agggtaccca ctcgacgaag acgcgcggcg aggtcagtgg 1441 cggtggccgc aagccctacc ggcagaaggg gaccggtcgt gcccggcagg gctcgacgcg 1501 ggcgccgcag ttcaccggcg gtggcgtggt acacggtccc aagccgcgcg actacagcca 1561 gcgcacaccc aagaagatga tcgccgcggc gctgcgcggg gcgctgtccg accgggcccg 1621 caacgggcgt atccacgcga tcaccgagct agtggaaggt caaaacccgt cgaccaagag 1681 cgccagggca tttctggtca gcctgacaga acgtaaacag gtgctggtgg tcatcgggcg 1741 cagcgacgaa ggccggcgcg aaagcgtgcg caatctgccg ggcgtgcaca tcctggcgcc 1801 ggaccagctc aacacctatg acgtgctgcg tgccgacgac gtggtgttca gcgttgaggc 1861 gctgaatgcc tatatcgcgg ccaacaccac gacgtccgag gaggtttcgg cctgatggcg 1921 acgctcgctg acccccgcga catcatcctg gccccggtga tctcggagaa atcctatggg 1981 ttgctggatg acaacgtgta cacgtttttg gtgcgcccgg attccaacaa gacgcagatc 2041 aagatcgccg tcgagaagat ttttggcgtc aaggtcgcat cggtgaacac cgcgaaccgg 2101 cagggcaagc gtaaacgcac ccggaccgga tacggcaagc gcaagagcac caagcgcgcc 2161 atcgtcaccc tggcgccggg cagcaggccg atcgacctgt tcggggcacc ggcctagccc 2221 ggcgacgatg cagagcgaag cgatgaggag gagcagggca atgcgggcta gcccggcgac 2281 gagagcgtga gagaaagacc tgattagaca tggcaattcg caagtacaag cccacgacgc 2341 ctggtcgtcg cggcgccagc gtatcttatt tcgccgagat cacccggtca accccggaga 2401 agtcgctggt gcgcccgctg cacggtcgcg gtggacgcaa cgcgcatggc cggattacca 2461 cccggcacaa aggcgggggt cataagcgcg cttaccggat gatcgacttt cgccgcaatg 2521 acaaagatgg tgtcaacccc aaggtcgcgc acatcgagta cgacccgaac cgtaccgcac 2581 ggattgcgtt gctccactat ctcgatgggg agaagcgcta catcattgca cccaacggac 2641 tttcgcaagg ggatgtggtg gaatccggcg ctaacgccga catcaagccg ggcaacaacc 2701 tgccattgcg caacatcccg gccggtacct tgatccacgc cgtggagctc cgcccgggag 2761 gtggcgctaa gcttgcgcgc tcggccgggt cgagcatcca gctgctcggc aaggaggcca 2821 gctacgcgtc gctgcgtatg cccagcggtg agatccgccg ggtcgacgtc cgctgccgcg 2881 cgaccgtcgg cgaagtgggc aatgccgagc aggcaaacat caactggggc aaggccggtc 2941 ggatgcggtg gaaggccaag cgcccgtcgg tccggggcgt ggtgatgaac ccggtcgacc 3001 acccgcacgg cggtggtgag ggtaagacct ccggcggccg tcacccggtt agcccgtggg 3061 gcaagcctga ggggcgtacc cgcaatgcga acaagtcgag caacaagttc atcgtccgac 3121 gccggcgcac cggcaagaag cactcgcgtt agccgcgcaa tcagatctag ggagtttcag 3181 gagtagccaa ccatgccacg cagcctgaag aagggcccgt tcgtcgacga gcatctgctc 3241 aagaaggtcg atgtccagaa cgagaagaac accaagcagg tcatcaagac ctggtcgcgt 3301 cggtcgacca tcattccgga cttcatcggc catacctttg cggtgcacga cggccgcaag 3361 cacgtccccg tgttcgtcac cgaatcgatg gtgggccaca aacttggtga gttcgcgccg 3421 acacgcacct tcaagggcca cattaaagac gaccgaaaga gcaagcggcg atgactgcgg 3481 ctactaaggc taccgagtat ccctcggcgg tcgccaaggc ccgatttgtg cgggtgtcgc 3541 caagaaaggc gcgccgggtg atcgatctgg tgcgtggcag gtcggtgtca gacgcgctcg 3601 acatcctgcg ctgggcgccg caggccgcca gcggtccggt ggccaaagtg atcgccagtg 3661 cggcggccaa cgcgcaaaac aacggcgggc tggacccggc aaccttggtg gtggccaccg 3721 tgtacgccga ccagggaccg accgccaagc gcatccgtcc gcgcgcccag ggccgcgcgt 3781 tccgcatccg ccggcgcact agccacatca cggtggtggt ggaaagccgg ccggccaaag 3841 atcaacggtc ggcgaaatcg tcgcgggccc gccgcaccga ggccagcaag gccgccagca 3901 aggtcggggc tacggcgccg gccaagaaag cggccgccaa agcgcccgcc aagaaggcac 3961 ccgccagttc cggcgttaag aagacacccg caaagaaagc gcccgccaag aaggcgcccg 4021 ccaaggcttc tgagacttct gcagcgaagg gaggctcaga ctagtgggcc aaaagatcaa 4081 tccgcatggc ttccggctgg gcatcaccac cgactggaag tcgcgctggt atgccgacaa 4141 gcagtatgcc gagtacgtca aggaggacgt ggcgatccgc cggctgctgt ccagtggcct 4201 agagcgtgct gggatcgccg atgtagagat cgagcggacc cgcgaccggg tccgggtgga 4261 cattcacacc gcgcgtccgg gcatcgtcat tggtcggcgt gggaccgagg ccgaccggat 4321 tcgtgccgac ctggaaaagc tgaccggcaa gcaggtccag ctcaacatcc tggaggtcaa 4381 aaacccggag tcgcaagcgc aattagtggc ccagggggta gccgagcagt tgagcaaccg 4441 ggtggcgttc cgccgcgcaa tgcgcaaggc gatccagtcg gcgatgcgtc agcccaacgt 4501 caagggaatc cgggtgcagt gctcgggccg cctcggcggc gcggaaatga accgctcgga 4561 gttctaccgc gagggccgcg tcccgctgca caccttgcgg gcagatatcg actacggcct 4621 atacgaggcc aagaccacct tcggccggat cggtgtgaag gtgtggatct acaagggtga 4681 catcgtgggc ggcaaacgtg aattggctgc cgccgcgcca gcgggcgccg accgtccgcg 4741 ccgtgagcgg ccgtcgggca cgcgcccccg tcgcagcggt gcttcgggca ccacggcgac 4801 cggtaccgac gcgggtcggc ccgcgggtgg cgaagaggcc gctcctgacg ccgcagcgcc 4861 cgttgaagcg cagagcacgg agagctgaat catgttgatt ccccgtaagg ttaaacatcg 4921 caagcagcac catcctcgcc agcgcggcat cgccagcggc ggcaccacgg tgaacttcgg 4981 cgactacggc attcaggccc ttgagcacgc ctatgtcacc aaccggcaga tcgaatcggc 5041 gcgtatcgcc atcaaccggc acatcaagcg tggcggcgag gtttggatca acatcttccc 5101 tggccgcccg ctgaccaaga agcccgccga aacccgcatg ggttcgggca agggctcgcc 5161 ggagtggtgg gtagccaacg ttaagccggg ccgggttctg ttcgagctca gttaccccaa 5221 tgaaggtgtc gcccgggccg cgctcacccg agcgatccac aagctgccga tcaaggcacg 5281 cattattact cgagaggagc agttctgatg gcagtgggtg tctcgccggg cgaactgcgt 5341 gagctcaccg acgaggagct ggccgagcgg ttgcgcgagt ccaaggaaga gttgttcaac 5401 ttgcgtttcc agatggcgac cggccagctc aacaataacc gccggctccg tacggtgcgt 5461 caggaaatcg cgcgcatcta caccgtgtct gcgcgaacga gaactgggtc tggcggcgac 5521 tgggcccgat ggtaaggaat cgtgatggca gaggctaaga ccggcgcgaa ggcggcgcct 5581 agggtggcta aggccgccaa ggcggccccc aagaaggccg cacccaacga cgctgaggcc 5641 ataggtgcgg ccaacgcggc aaacgttaag gggcccaagc acactccgcg tactccgaag 5701 ccacgcggcc gccgcaagac acgaatcggc tatgtggtga gcgacaaaat gcagaagacc 5761 attgtggtgg agctggaaga ccgcatgcgg cacccgctat acggcaagat catccggacc 5821 actaagaagg tcaaggcaca cgacgaagac agcgttgccg gcattggcga ccgtgtctcg 5881 ctgatggaga cgcgtccgct gtcggcgacc aagcgctggc ggctcgtcga gatcctcgag 5941 aaggctaagc cctgacgagc ag //