LOCUS Y00535 3432 bp DNA linear BCT 14-NOV-2006 DEFINITION A.tumefaciens nopaline plasmid pTiC58 virB, virG and virC genes. ACCESSION Y00535 VERSION Y00535.1 KEYWORDS plasmid; virB gene; virC1 gene; virC2 gene; virG gene. SOURCE Agrobacterium tumefaciens ORGANISM Agrobacterium tumefaciens Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex. REFERENCE 1 (bases 1 to 3432) AUTHORS Kado C.I. JOURNAL Submitted (10-AUG-1987) to the INSDC. Dr. C. I. Kado, Davis Crown Gall Group, Department of Plant Pathology, University of California, Davis. CA 95616, USA. REFERENCE 2 (bases 1 to 1885) AUTHORS Powell B.S., Powell G.K., Morris R.O., Rogowsky P.M., Kado C.I. TITLE Nucleotide sequence of the virG locus of the Agrobacterium tumefaciens plasmid pTiC58 JOURNAL Mol. Microbiol. 1(3), 309-316(1987). PUBMED 3448462 REFERENCE 3 (bases 1693 to 3432) AUTHORS Close T.J., Tait R.C., Rempel H.C., Hirooka T., Kim L., Kado C.I. TITLE Molecular characterization of the virC genes of the Ti plasmid JOURNAL J. Bacteriol. 169(6), 2336-2344(1987). PUBMED 3584058 FEATURES Location/Qualifiers source 1..3432 /organism="Agrobacterium tumefaciens" /plasmid="pTiC58" /strain="plasmid pTiC58" /strain="C58" /mol_type="genomic DNA" /db_xref="taxon:358" CDS <1..757 /codon_start=2 /transl_table=11 /gene="virB" /db_xref="GOA:P07169" /db_xref="InterPro:IPR001482" /db_xref="InterPro:IPR014155" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/Swiss-Prot:P07169" /protein_id="CAA68594.1" /translation="VPSGTVSLTIRRPSSRVSSLKEVSSRYDAPRWNQWKERKKRHAQ HDEAILRYYDNGDLEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLINAIPPQERLITI EDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLGEIRDDAAWAY LSEVVSGHPGSISTIHGANPVQGFKKLFSLVKSSAQGASLEDRTLIDMLATAVDVIVP FRAHGDIYEVGEIWLAADARRRGETIGDLLNQQ" regulatory 828..858 /regulatory_class="promoter" regulatory 828..833 /regulatory_class="minus_35_signal" regulatory 855..858 /regulatory_class="minus_10_signal" regulatory 875..912 /note="pot. constitutive promoter region" /regulatory_class="promoter" CDS 976..1737 /transl_table=11 /gene="virG" /db_xref="GOA:P07545" /db_xref="InterPro:IPR001789" /db_xref="InterPro:IPR001867" /db_xref="InterPro:IPR011006" /db_xref="InterPro:IPR016032" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR039420" /db_xref="UniProtKB/Swiss-Prot:P07545" /protein_id="CAA68595.1" /translation="MAGQDPRLRGEPLKHVLVIDDDVAMRHLIVEYLTIHAFKVTAVA DSKQFNRVLCSETVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISGARLEEADKVI ALELGATDFIAKPFGTREFLARIRVALRVRPSVARTKDRRSFSFADWTLNLRRRRLIS EEGSEVKLTAGEFNLLVAFLEKPRDVLSREQLLIASRVREEEVYDRSIDVLILRLRRK LEGDPTTPQLIKTARGAGYFFDADVDVSYGGVMAA" misc_difference 1753 /replace="g" /note="conflict" /citation=[3] CDS complement(1879..2487) /transl_table=11 /gene="virC2" /db_xref="GOA:P07166" /db_xref="InterPro:IPR009841" /db_xref="InterPro:IPR010985" /db_xref="InterPro:IPR038473" /db_xref="PDB:2RH3" /db_xref="UniProtKB/Swiss-Prot:P07166" /protein_id="CAA68596.1" /translation="MGIRKPALSVGEARRLAAARPEIVHPSLPVATQNSTLPQPPENL DEEDRRPAPATAKRCHSSDQQSMLTVDALSSTTAPEKIQVFLSARPPAPEVSKIYDNL ILQYSPSKSLQMILRRALGDFENMLADGSFRAAPKSYPIPHTAFEKSIIVQTSRMFPV SLIEAARNHFDPLGLETARAFGHKLATAALACFFAREKATNS" CDS complement(2490..3185) /transl_table=11 /gene="virC1" /db_xref="GOA:P07165" /db_xref="InterPro:IPR009744" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/Swiss-Prot:P07165" /protein_id="CAA68597.1" /translation="MKLLTFCSFKGGAGKTTALMGLCAAFASDGKRLALFDADENRPL TRWKENALRSNTWGSFCEVYAAEEMALLEAAYEDAELQGFDYALADTHGGSSELNNTI IASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAVLRQRVPVGRLTTSQR AMSDMLASLPVVQSPMHERDAFAAMKERGMLHLTLLNMRTDPTMRLLERNLRIAMEEL VTISKLVSEALEG" BASE COUNT 773 a 816 c 971 g 872 t ORIGIN 1 ggtaccatcg ggcaccgtca gcttgacgat tcgacggcca agttcccgtg tttctagtct 61 caaagaagtc tcgtcccgtt acgatgctcc gaggtggaat cagtggaagg aacgaaaaaa 121 acggcatgct cagcatgatg aagctatcct tcggtactat gacaacgggg atctggaggc 181 gtttctgcac gcatgtgtcg ttggtcggtt gacgatgctg ctttgcggac ccaccgggag 241 tggcaagaca acgatgagca agaccttgat caacgctatc ccgccgcagg aaaggctgat 301 taccatcgaa gatacgctcg aactcgtcat tccacacgag aaccacgtaa ggctgcttta 361 ttctaagaat ggggctgggc tgggcgcagt taccgctgag cacctgctac aggctagcct 421 gcgcatgcga ccggaccgaa tactgctcgg cgagatacgc gacgatgccg cgtgggctta 481 tctgagtgaa gtcgtctcag ggcatccggg atcgatttcc acaatacatg gtgccaatcc 541 cgtccaaggt ttcaaaaagc tattttcgct cgtgaaaagc agcgctcagg gggctagctt 601 ggaagatcgc accctgattg acatgctcgc aaccgcagtt gatgtcatcg tacccttccg 661 tgcccacggt gacatttacg aggtgggcga aatctggctc gctgccgatg cgcgtcggcg 721 cggtgagaca ataggcgatc ttcttaacca gcagtagttg tgatccatgt ttctaaatgc 781 cgcatggcgc gttgtagaat tacgtttgta gcaatgctca gcaatctttg tcatcaaacg 841 gagacatcta gtttgcattt ctgtcgtgcg cggtttggtc gaaatcttgc cgaaatgccc 901 gtgtagtgag agaaaattaa agagtggagt ctagcaaata caacctttac gtgtataaat 961 tctgttgagc tgcaaatggc tggccaggat cctagattga gaggtgaacc gttgaaacac 1021 gttcttgtca tcgatgacga tgtcgctatg cggcatctta tagtcgagta tcttacgatc 1081 catgccttta aggtgactgc ggtagccgac agcaagcagt tcaatcgtgt actctgctcc 1141 gagacggtcg atgtcgtggt cgtcgatctt aatttgggtc gcgaagatgg gcttgaaatt 1201 gttcgtagtc tggccacgaa gtccgatgtt ccaatcataa ttattagcgg cgctcgcctc 1261 gaagaggcgg acaaagttat tgcgctcgag ttgggagcaa ccgattttat tgccaagcct 1321 tttgggacgc gggaatttct ggcgcgcatc cgtgttgcgt tacgcgtgcg gcccagtgtc 1381 gcgcgaacca aagatcgacg ctcatttagt ttcgctgact ggacacttaa tctcaggcga 1441 cgccgcttga tttcggaaga gggcagtgag gtgaaactca cggcaggtga gtttaatctc 1501 ctggttgctt tcctggagaa gccgcgcgac gtcctatccc gggagcagct tctgatcgcc 1561 agtcgggtac gcgaggagga ggtgtatgac agaagtattg atgtcctcat tttgcggctg 1621 cgccggaagc ttgaggggga tccgacgacc cctcagttga tcaagactgc aagaggtgct 1681 ggctatttct ttgacgctga cgtggatgtt tcgtacgggg gtgtgatggc ggcctgaggt 1741 agaggtgcat ttcgccttta gcaatctgtt cccaacgtga gcagattgct atgcggcttg 1801 gcaaagctgc ctttcctcgg tactatccga aaaactcagc actgcggagt gattggatgg 1861 gtcctatctt ttgagagatc agctgttcgt tgccttctcc cgagcaaaga aacatgcaag 1921 cgctgcggta gccagcttgt ggccgaaagc ccgggcggtc tccaatccca atggatcaaa 1981 gtgattgcga gcggcttcta ttagcgagac cgggaacatg cgggaggtct gaacgatgat 2041 tgatttttcg aaagctgtgt gagggatcgg ataactcttc ggagccgcac gaaacgatcc 2101 atccgccagc atgttttcaa aatcgccaag cgcacggcgc aagatcattt gtagcgactt 2161 ggaaggactg tattgcagga tcaggttgtc atatatcttc gatacttcag gcgcgggcgg 2221 gcgcgctgaa aggaagacct ggatcttttc tggcgctgtc gtcgaactca aagcatccac 2281 ggtcagcatc gattgctgat cagagctgtg acaacgcttg gcggtggctg gggcaggtcg 2341 tcgatcttcc tcgtcgagat tttcaggcgg ctgcggcagg gtcgagtttt gggtggcaac 2401 aggcaaagaa ggatggacga tttcgggtcg agcggcggca agccgcctgg cctccccgac 2461 agacaaagcg ggtttgcgaa ttcccatctt cacccctcca aggcttcgct aaccaatttg 2521 gagatagtga cgagttcctc catggcgatt ctgagattcc gttcgaggag gcgcattgtc 2581 ggatcggttc tcatattcag caatgtgaga tgcaacatgc cacgttcctt catcgcggca 2641 aatgcgtctc tctcgtgcat gggagactgt acaactggaa ggcttgcgag catgtccgac 2701 atcgcgcgct gcgatgtggt caatcgacca accggcacgc gttggcgcaa tacggctgtc 2761 ggaattgcca agttctcgct cagcagcagt tcaatgacat agcggtaggt cgacaatgct 2821 tcatcgatat cgagcggagt taacatggtc gggatcagaa gcaggtttga gctggcaatg 2881 atcgtgttgt tgagttcgct cgaaccacca tgcgtatcgg ccagcgcata atcaaatccc 2941 tggagttcgg cgtcctcata ggccgcctca aggagtgcca tttcctcggc ggcgtagact 3001 tcgcagaagg agccccaggt attgctgcga agggcgtttt ctttccatcg cgttagtggt 3061 cggttttcat cagcgtcgaa gagagccaat cgtttgccgt cacttgcaaa ggcggcgcaa 3121 agacccatga gtgccgtggt tttgccggct cctcccttga aggagcaaaa tgtcagaagt 3181 ttcatgtcct tatcctgtcg attttgtgaa gcggaagtgt gtctgtactt ttatttgtgt 3241 gtatgatttt gcgataattc ataagtaatg tagtaattac ctgattttat atttcaattt 3301 tattgtaata taatttcaat tgtaataata taaaaataaa tatcccttat gtgttcttga 3361 tttcgttttg tatatggcta gattcccatc tgccacgacg aggaaatgct acggcggggc 3421 aagttcagat ct //