LOCUS X73958 5582 bp DNA linear BCT 18-APR-2005 DEFINITION E.coli gcv operon DNA sequence. ACCESSION X73958 VERSION X73958.1 KEYWORDS aminomethyl transferase; gcv operon; gcvH gene; gcvP gene; gcvT gene; glycine cleavage system; glycine dehydrogenase; H protein; P protein; T protein. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 5582) AUTHORS Okamura-Ikeda K. JOURNAL Submitted (06-JUL-1993) to the INSDC. K. Okamura-Ikeda, Institute for Enzyme Research, University of Tokushima, Kuramotocho 3-chome, Tokushima 770, JAPAN REFERENCE 2 AUTHORS Okamura-Ikeda K., Ohmura Y., Fujiwara K., Motokawa Y. TITLE Cloning and nucleotide sequence of the gcv operon encoding the Escherichia coli glycine-cleavage system JOURNAL Eur. J. Biochem. 216(2), 539-548(1993). PUBMED 8375392 FEATURES Location/Qualifiers source 1..5582 /organism="Escherichia coli" /map="62.5-62.6 min." /strain="W3110" /mol_type="genomic DNA" /clone_lib="Kohara lambda phage" /clone="5E11" /db_xref="taxon:562" regulatory 139..164 /regulatory_class="promoter" regulatory 270..273 /regulatory_class="ribosome_binding_site" CDS 278..1372 /transl_table=11 /gene="gcvT" /product="aminomethyltransferase" /EC_number="2.1.2.10" /db_xref="GOA:P27248" /db_xref="InterPro:IPR006222" /db_xref="InterPro:IPR006223" /db_xref="InterPro:IPR013977" /db_xref="InterPro:IPR022903" /db_xref="InterPro:IPR027266" /db_xref="InterPro:IPR028896" /db_xref="InterPro:IPR029043" /db_xref="PDB:1VLO" /db_xref="PDB:3A8I" /db_xref="PDB:3A8J" /db_xref="PDB:3A8K" /db_xref="UniProtKB/Swiss-Prot:P27248" /protein_id="CAA52144.1" /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDA GMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVY YFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLF NDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKP CGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREH GTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI GETAIVQIRNREMPVKVTKPVFVRNGKAVA" regulatory 1384..1387 /regulatory_class="ribosome_binding_site" CDS 1396..1785 /transl_table=11 /gene="gcvH" /product="H protein" /db_xref="GOA:P0A6T9" /db_xref="InterPro:IPR000089" /db_xref="InterPro:IPR002930" /db_xref="InterPro:IPR003016" /db_xref="InterPro:IPR011053" /db_xref="InterPro:IPR017453" /db_xref="InterPro:IPR033753" /db_xref="PDB:3A7A" /db_xref="PDB:3A7L" /db_xref="PDB:3A8I" /db_xref="PDB:3A8J" /db_xref="PDB:3A8K" /db_xref="PDB:3AB9" /db_xref="UniProtKB/Swiss-Prot:P0A6T9" /protein_id="CAA52145.1" /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI FKIKASDESELESLLDATAYEALLEDE" regulatory 1889..1892 /regulatory_class="ribosome_binding_site" CDS 1904..4777 /transl_table=11 /gene="gcvP" /product="glycine dehydrogenase (decarboxylating)" /EC_number="1.4.4.2" /db_xref="GOA:P33195" /db_xref="InterPro:IPR003437" /db_xref="InterPro:IPR015421" /db_xref="InterPro:IPR015422" /db_xref="InterPro:IPR015424" /db_xref="InterPro:IPR020581" /db_xref="UniProtKB/Swiss-Prot:P33195" /protein_id="CAA52146.1" /translation="MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQ IVPKDIQLATPPQVGAPATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNM LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM AKRVSKLKNANRFFVASDVHPQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQ QVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVP MGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC VEVADKAGVLTRAEAAEINLRSDILNAVGITLDETTTRENVMQLFNVLLGDNHGLDID TLDKDVAHDSRSIQPAMLRDDEILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP LGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVC MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC DKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQD AFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFHAPTMSFPVAGTLM VEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP YSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ" regulatory 4800..4821 /note="rho-independant terminator" /regulatory_class="terminator" BASE COUNT 1322 a 1437 c 1572 g 1251 t ORIGIN 1 aatattgtct tattcaaatt gactttctca tcacatcatc tttgtataga aactggtgta 61 ttttttggtt ttttattctg tcgcgatttt tgcatttttt aaccataagc taatgtgatg 121 atcaatttta ccttatggtt aacagtctgt ttcggtggta agttcaggca aaagagaacg 181 attgcgttgg ggaccgggag tggctccgat gctgggtttc gtggtgataa tttcaccatg 241 aaaaagttgt cagccccgct tattcaatga ggacaagatg gcacaacaga ctcctttgta 301 cgaacaacac acgctttgcg gcgctcgcat ggtggatttc cacggctgga tgatgccgct 361 gcattacggt tcgcaaatcg acgaacatca tgcggtacgt accgatgccg gaatgtttga 421 tgtgtcacat atgaccatcg tcgatcttcg cggcagccgc acccgggagt ttctgcgtta 481 tctgctggcg aacgatgtgg cgaagctcac caaaagcggc aaagcccttt actcggggat 541 gttgaatgcc tctggcggtg tgatagatga cctcatcgtc tactacttta ctgaagattt 601 cttccgcctc gttgttaact ccgccacccg cgaaaaagac ctctcctgga ttacccaaca 661 cgctgaacct ttcggcatcg aaattaccgt tcgtgatgac ctttccatga ttgccgtgca 721 agggccgaat gcgcaggcaa aagctgccac actgtttaat gacgcccagc gtcaggcggt 781 ggaagggatg aaaccgttct ttggcgtgca ggcgggcgat ctgtttattg ccaccactgg 841 ttataccggt gaagcgggct atgaaattgc gctgcccaat gaaaaagcgg ccgatttctg 901 gcgtgcgctg gtggaagcgg gtgttaagcc atgtggcttg ggcgcgcgtg acacgctgcg 961 tctggaagcg ggcatgaatc tttatggtca ggagatggac gaaaccatct ctcctttagc 1021 cgccaacatg ggctggacca tcgcctggga accggcagat cgtgacttta tcggtcgtga 1081 agccctggaa gtgcagcgtg agcatggtac agaaaaactg gttggtctgg tgatgaccga 1141 aaaaggcgtg ctgcgtaatg aactgccggt acgctttacc gatgcgcagg gcaaccagca 1201 tgaaggcatt atcaccagcg gtactttctc cccgacgctg ggttacagca ttgcgctggc 1261 gcgcgtgccg gaaggtattg gcgaaacggc gattgtgcaa attcgcaacc gtgaaatgcc 1321 ggttaaagtg acaaaacctg tttttgtgcg taacggcaaa gccgtcgcgt gatttacttt 1381 tttggagatt gattgatgag caacgtacca gcagaactga aatacagcaa agaacacgaa 1441 tggctgcgta aagaagccga cggcacttac accgttggta ttaccgaaca tgctcaggag 1501 ctgttaggcg atatggtgtt tgttgacctg ccggaagtgg gcgcaacggt tagcgcgggc 1561 gatgactgcg cggttgccga atcggtaaaa gcggcgtcag acatttatgc gccagtaagc 1621 ggtgaaatcg tggcggtaaa cgacgcactg agcgattccc cggaactggt gaacagcgaa 1681 ccgtatgcag gcggctggat ctttaaaatc aaagccagcg atgaaagcga actggaatca 1741 ctgctggatg cgaccgcata cgaagcattg ttagaagacg agtaacggct ttattcctct 1801 tctgcgggag aggatcaggg tgaggaaaat ttatgcctca ccctcactct cttcgtaagg 1861 agagaggttc acaattcact gcacgtttca ggaaccatcg ctcatgacac agacgttaag 1921 ccagcttgaa aacagcggcg cttttattga acgccatatc ggaccggacg ccgcgcaaca 1981 gcaagaaatg ctgaatgccg ttggtgcaca atcgttaaac gcgctgaccg gccagattgt 2041 gccgaaagat attcaacttg cgacaccacc gcaggttggc gcaccggcga ccgaatacgc 2101 cgcactggca gaactcaagg ctattgccag tcgcaataaa cgcttcacgt cttacatcgg 2161 catgggttac accgccgtgc agctaccgcc ggttatcctg cgtaacatgc tggaaaatcc 2221 gggctggtat accgcgtaca ctccgtatca acctgaagtc tcccagggcc gccttgaagc 2281 actgctcaac ttccagcagg taacgctgga tttgactgga ctggatatgg cctctgcttc 2341 tcttctggac gaggccaccg ctgccgccga agcaatggcg atggcgaaac gcgtcagcaa 2401 actgaaaaat gccaaccgct tcttcgtggc ttccgatgtg catccgcaaa cgctggatgt 2461 ggtccgtact cgtgccgaaa cctttggttt tgaagtgatt gtcgatgacg cgcaaaaagt 2521 gctcgaccat caggacgtct tcggcgtgct gttacagcag gtaggcacta ccggtgaaat 2581 tcacgactac actgcgctta ttagcgaact gaaatcacgc aaaattgtgg tcagcgttgc 2641 cgccgatatt atggcgctgg tgctgttaac tgcgccgggt aaacagggcg cggatattgt 2701 ttttggttcg gcgcaacgct tcggcgtgcc gatgggctac ggtggcccac acgcggcatt 2761 ctttgcggcg aaagatgaat acaaacgctc aatgccgggc cgtattatcg gtgtatcgaa 2821 agatgcagct ggcaataccg cgctgcgcat ggcgatgcag actcgcgagc aacatatccg 2881 ccgtgagaaa gcgaactcca acatttgtac ttcccaggta ctgctggcaa acatcgccag 2941 cctgtatgcc gtttatcacg gcccggttgg cctgaaacgt atcgctaacc gcattcaccg 3001 tctgaccgat atcctggcgg cgggcctgca acaaaaaggt ctgaaactgc gccatgcgca 3061 ctatttcgac accttgtgtg tggaagtggc cgacaaagcg ggcgtactga cgcgtgccga 3121 agcggctgaa atcaacctgc gtagcgatat tctgaacgcg gttgggatca cccttgatga 3181 aacaaccacg cgtgaaaacg taatgcagct tttcaacgtg ctgctgggcg ataaccacgg 3241 cctggacatc gacacgctgg acaaagacgt ggctcacgac agccgctcta tccagcctgc 3301 gatgctgcgc gacgacgaaa tcctcaccca tccggtgttt aatcgctacc acagcgaaac 3361 cgaaatgatg cgctatatgc actcgctgga gcgtaaagat ctggcgctga atcaggcgat 3421 gatcccgctg ggttcctgca ccatgaaact gaacgccgcc gccgagatga tcccaatcac 3481 ctggccggaa tttgccgaac tgcacccgtt ctgcccgccg gagcaggccg aaggttatca 3541 gcagatgatt gcgcagctgg ctgactggct ggtgaaactg accggttacg acgccgtttg 3601 tatgcagccg aactctggcg cacagggcga atacgcgggc ctgctggcga ttcgtcatta 3661 tcatgaaagc cgcaacgaag ggcatcgcga tatctgcctg atcccggctt ctgcgcacgg 3721 aactaacccc gcttctgcac atatggcagg aatgcaggtg gtggttgtgg cgtgtgataa 3781 aaacggcaac atcgatctga ctgatctgcg cgcgaaagcg gaacaggcgg gcgataacct 3841 ctcctgtatc atggtgactt atccttctac ccacggcgtg tatgaagaaa cgatccgtga 3901 agtgtgtgaa gtcgtgcatc agttcggcgg tcaggtttac cttgatggcg cgaacatgaa 3961 cgcccaggtt ggcatcacct cgccgggctt tattggtgcg gacgtttcac accttaacct 4021 acataaaact ttctgcattc cgcacggcgg tggtggtccg ggtatgggac cgatcggcgt 4081 gaaagcgcat ttggcaccgt ttgtaccggg tcatagcgtg gtgcaaatcg aaggcatgtt 4141 aacccgtcag ggcgcggttt ctgcggcacc gttcggtagc gcctctatcc tgccaatcag 4201 ctggatgtac atccgcatga tgggcgcaga agggctgaaa aaagcaagcc aggtggcaat 4261 cctcaacgcc aactatattg ccagccgcct gcaggatgcc ttcccggtgc tgtataccgg 4321 tcgcgacggt cgcgtggcgc acgaatgtat tctcgatatt cgcccgctga aagaagaaac 4381 cggcatcagc gagctggata ttgccaagcg cctgatcgac tacggtttcc acgcgccgac 4441 gatgtcgttc ccggtggcgg gtacgctgat ggttgaaccg actgaatctg aaagcaaagt 4501 ggaactggat cgctttatcg acgcgatgct ggctatccgc gcagaaattg accaggtgaa 4561 agccggtgtc tggccgctgg aagataaccc gctggtgaac gcgccgcaca ttcagagcga 4621 actggtcgcc gagtgggcgc atccgtacag ccgtgaagtt gcggtattcc cggcaggtgt 4681 ggcagacaaa tactggccga cagtgaaacg tctggatgat gtttacggcg accgtaacct 4741 gttctgctcc tgcgtaccga ttagcgaata ccagtaattc actgattcga ctattttcta 4801 aaggcgcttc ggcgcctttt tagtcagatg acaaagtaca aaagtgctca gacagtcccc 4861 tcgccccttt ggggagaggg ttagggtgag gggaacaggc cggcactggc gcgaatattt 4921 accctcgacc ccggccctct ccctgaaagg gcgaggggga aaagcgtgcc aacattgaag 4981 attgagccag tttgttagca atctcaaaga tacgtcaacg aattaatttt tctcggaaaa 5041 acaaatggct atagcacttg tgactggtgg cagtcgcggc atcgggcggg caactgcatt 5101 actgttggcg caagaagggt atacggtggc ggttaattat cagcaaaacc tccacgcggc 5161 gcaggaagtg atgaacttaa taacgcaagc cggtggcaaa gcattcgtgc tccaggcgga 5221 tatcagcgac gaaaaccagg tcgttgcgat gtttacagca atcgatcagc acgatgaacc 5281 gctagcagcg ctggtcaata acgccgggat cttgtttacc cagtgcaccg ttgaaaacct 5341 taccgcagag cgaatcaacc gagtactttc caccaacgtg acgggatatt ttctctgctg 5401 ccgcgaggcg gtaaaacgca tggcgcttaa aaatggtggc agtggcggcg ctatcgtcaa 5461 tgtctcttcg gtggcctcac ggttgggttc gccaggggaa tatgttgatt acgcggcatc 5521 gaaaggggcg attgatacgt taaccaccgg actatcgctg gaagtcgccg cgcaggggat 5581 cc //