LOCUS X70829 7308 bp DNA linear VRL 18-APR-2005 DEFINITION Human papillomavirus type 65 complete genome. ACCESSION X70829 VERSION X70829.1 KEYWORDS complete genome; ORF E1; ORF E2; ORF E4; ORF E6; ORF E7; ORF L1; ORF L2. SOURCE Human papillomavirus 65 ORGANISM Human papillomavirus 65 Viruses; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus. REFERENCE 1 AUTHORS Egawa K., Delius H., Matsukura T., Kawashima M., de Villiers E.M. TITLE Two novel types of human papillomavirus, HPV 63 and HPV 65: comparisons of their clinical and histological features and DNA sequences to other HPV types JOURNAL Virology 194(2), 789-799(1993). PUBMED 8389082 REFERENCE 2 (bases 1 to 7308) AUTHORS Delius H. JOURNAL Submitted (27-JAN-1993) to the INSDC. H. Delius, Deutsches Krebsforschungszentrum, Abt ATV, Im Neuenheimer Feld 506, W -6900 Heidelberg, FRG FEATURES Location/Qualifiers source 1..7308 /organism="Human papillomavirus 65" /mol_type="genomic DNA" /db_xref="taxon:28312" CDS 102..524 /note="putative E6 ORF" /db_xref="GOA:Q07856" /db_xref="InterPro:IPR001334" /db_xref="InterPro:IPR038575" /db_xref="UniProtKB/Swiss-Prot:Q07856" /protein_id="CAA50171.1" /translation="MADGRPAALDDFCRRFDISFFDLHLTCIFCSHTVDLQDLASFYL KKLSLVFRGGCYYACCSECLRLSARFEQENYFQCSIKAVNLEEVAQRKIKEICIRCIC CLRLLDIVEKLDLLYSDQACYLIRGLWRGYCRNCIRKQ" CDS 521..817 /note="putative E7 ORF" /db_xref="GOA:Q07859" /db_xref="InterPro:IPR000148" /db_xref="UniProtKB/Swiss-Prot:Q07859" /protein_id="CAA50172.1" /translation="MRGAAPRVADLNLELNDLVLPINLLSEEVLQPSDDESEAPEEEL FPFRIDTCCYRCEVNVRITLFAVEFGLRALEQLIVDGKLTFCCTTCARTLRNGR" CDS 807..2603 /note="putative E1 ORF" /db_xref="GOA:Q07848" /db_xref="InterPro:IPR001177" /db_xref="InterPro:IPR014000" /db_xref="InterPro:IPR014015" /db_xref="InterPro:IPR016393" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/Swiss-Prot:Q07848" /protein_id="CAA50173.1" /translation="MADKGTENFDLEGSSWYIVHEAECTDSIDTLEDLCDESDSNVSN LIDDDVVDQGNSLALYNAKITDDCDNAIAHLKRKYNKSPEQAVAELSPQLQAVKITPE RNSKRRLFQEDSGIFEDEAENSLTQVESNSQTGGNSQDGGGDINLLLLQTSNRRATML AKFKDWYGVSYNEITRVYKSDKSCSDNWVIVIFRAAVEVLESSKIVLQQHCTYIQVKI FGFSALYLLQFKSAKSRETVQKLMCSMLNIQEFQILTDPPKLRSVPTALYFYKQAMLT ESFVFGQTPDWIAKQTLVSHQAATTAETFELSKMVQWAYDNNLLEECDIAYHYAMYAD EDANAAAYLKSNNQVKHVRDCSTMVRMYKRYEMRDMSMSEWIYKCCDECTEEGDWKPI SQFLKYQGVNILSFLIVLKSFLKGIPKKNCIVIHGPPDTGKSLFCYSLVKFLKGKVVS YVNRSSHFWLQPLMDCKVGFMDDATYVCWTYIDQNLRNALDGNPMCIDAKHRAPQQLK LPPMLITSNIDVKQEQSLMYLHSRVQCFSFPNKMPFLDDGSPMYTFTDATWKSFFQKL GRQLELTDPEEESNGVPSRAFRCTSRSNSDSY" CDS 2545..3753 /note="putative E2 ORF" /db_xref="GOA:Q07851" /db_xref="InterPro:IPR000427" /db_xref="InterPro:IPR001866" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR033668" /db_xref="InterPro:IPR035975" /db_xref="InterPro:IPR036050" /db_xref="InterPro:IPR042503" /db_xref="InterPro:IPR042504" /db_xref="UniProtKB/Swiss-Prot:Q07851" /protein_id="CAA50174.1" /translation="MESLVARFDALQEAILTHIESQDDTLESQIRYWENIRKENAIMH FARKQGLTKLGLQPLPTLAVTEYNAKQAIQIHLTLQSLLKSPYGSERWTLPEVSAELI NTAPQNCLKKGGYDVSVWFDNDRYNAMVYTNWDYLYYQDVNEIWHKVKGEVDYDGLYF TDHTGERAYFTLFSTDAHRFSRTGLWTVHFKTQVISSSVVSSTNTPSFDFEEQQLPGP STPTYTELTQASPCGRGKSRESQPTSTTSPETSGLRVRRGRRQRKSGPGPGETPSKRR RGGGRGGGETRLESAPSPGEVGIRHRTVERQGLSRLGQLQAEARDPPMILLKGTANSL KCWRYRKQNSSNCGFLFMSTVWNWVGDVSENHSRMLIAFKSPGQRDSFVKHNLFPKLC TYTYGSLNSL" CDS 2876..3517 /note="putative E4 ORF" /note="no ATG" /db_xref="GOA:Q07873" /db_xref="UniProtKB/Swiss-Prot:Q07873" /protein_id="CAA50175.1" /translation="RKEVMMCLYGLIMIDIMLWCIQIGIIYIIKMSMKYGIKLKVKWI MMAYTLQTIQENVHTLLCLAQMLTDLAELDYGLCILKHKLFPPLLSAQQTPPPSTLRN NNYPGPQHPPTPSLPRRALVVGGNRGNLNRPPQRPPKPRGYEYDEDDDKENQGPGQER PPAKEEEEEGEEEERPDWSLRHLLGKWESDIEQLKDKVCRDLDNYKLKLGIHP" CDS 3755..5311 /note="putative L2 ORF" /db_xref="GOA:Q07875" /db_xref="InterPro:IPR000784" /db_xref="UniProtKB/Swiss-Prot:Q07875" /protein_id="CAA50176.1" /translation="MQASRRTKRDSIPNLYAKCQLSGNCLPDVKNKVEADTLADRLLR WLGSVIYLGGLGIGTGRGSGGSSGYNPLGAPSRVTPSGTVIRPTVPVEGLGPSEIIPV DVVNPGSSSVVPLEDLTVPEVTIDSGEVGGGGLHPSEIDVVTSSDPISDVTGTSSHPT IISGEDNAIAVLDVSPTEPPTKRIALGTRGATSTPHISVISGTTEFGQSSDLNVFVNA TFSGDSIGYTEEIPLEELNTIQQFEIETPPKTSTPRETIGRALERARDLYNRRVQQIA TRNPAMLGQPSRAIVFGFENPAFDADITQVFERDLEQVAAAPDADFADIVRIGRPRFS QTDTGQIRISRLGRRGTIKTRSGLQIGQAVHFYYDLSTIDTADAIELSTLGQHSGEQS IVDAMIESSFVDPFETPDPTYTEEQQLLDPLTEDFSNSHLVLTSSRRGSSFSIPTIPP GLGLRIYVDDVGSDLFVSYPETRVIPAGGLPTEPFTPLEPPFFSEFYSSDFVYRPSLY RKKRKRSDIF" CDS 5326..6876 /note="putative L1 ORF" /db_xref="GOA:Q07874" /db_xref="InterPro:IPR002210" /db_xref="InterPro:IPR011222" /db_xref="InterPro:IPR036973" /db_xref="UniProtKB/Swiss-Prot:Q07874" /protein_id="CAA50177.1" /translation="MASWLSAKGKVYLPPAQPVARVLETDEYITGTSLYFHAGTERLL TVGHPYFPVKDVQDQHKVLVPKVSGSQYRVFRFYLPDPNRFALIDNGFYDSDHERLVW RLRGIEIGRGGPLGIGTTGHPLYNKFGDSENPNGYRKQSDDNRQDVSLDPKQTQMFII GCTPAIGEHWDKAEPCASPVPQPGDCPPIELVNTYIEDGDMCDIGFGAFNFKALQQDK SSAPLDVVATMCKWPDFLKMSKDVYGDSLFFYGRREQLYARHFFVRAGAMGDALPEPF EVKTDYWIPAQEGQDQNTLGPHIYIGTPSGSLVSSESQLFNRPYWLNRAQGTNNGICW DNQLFVTLVDNTHNTNFTISVKTEAADESYKYKAGDFKQYLRHIEEFEMEFIFQLCTV PLTADVMAHLNVMNPNILDNWQLNFVPPPPSGIEDQYRFIQSRATRCPTQSPSTEKED PYKDLSFWGVDLTERFSSELSQFSLGRRFLYQSGLINGTLKRKRTINSQAPTSIKRSA KRKRSIKQ" BASE COUNT 2280 a 1306 c 1575 g 2147 t ORIGIN 1 attattaatg atagttggca acaaccatca tctaaagtaa tatataaccg gaagagatac 61 atataaaaag acacattgta ttcctgataa atcccatcca gatggcagat ggcagacctg 121 cagctttgga cgacttctgc agacgatttg atatttcttt ttttgatttg catcttactt 181 gtattttttg ttctcatact gttgatctgc aagatcttgc ttcgttttat cttaagaagc 241 ttagtttagt tttcaggggg ggttgctact atgcatgctg ttctgaatgc ttacgtttaa 301 gtgcaagatt tgagcaagag aattattttc agtgttctat aaaagctgtt aatttggaag 361 aagtagctca aaggaaaatt aaggagattt gcatcagatg tatatgttgt ttgagactac 421 tagacattgt tgagaaatta gacttgctgt actctgacca ggcctgctac ttaataaggg 481 gtttgtggag gggctattgc agaaattgca ttaggaaaca atgagaggag cagcacccag 541 ggttgcagat cttaatttag aattaaatga cttggtgttg cctataaacc tgctgagtga 601 ggaggtcttg caaccttcag atgatgagtc tgaggctcca gaggaggagc tttttccttt 661 tagaatagac acctgttgct atagatgtga agttaatgta aggattactc tgtttgctgt 721 ggaatttgga cttcgagcgt tggaacaact catagtggac ggaaagctga cgttttgctg 781 tactacttgt gcaagaacct taagaaatgg cagataaagg tacagaaaat tttgacttag 841 aagggagtag ttggtatatt gtgcatgaag cagaatgcac agacagtata gacactttgg 901 aggatttgtg cgacgaaagc gattcaaatg tttccaattt aattgatgac gatgtggttg 961 atcaggggaa ttccctggca ctgtacaatg caaaaataac tgatgattgt gataatgcaa 1021 tagcacacct aaaacgaaag tataacaaaa gtccagagca ggcagttgct gaattgagcc 1081 ctcagttgca ggctgtgaaa attactcctg aaagaaacag caaaaggaga ttatttcagg 1141 aggacagtgg gatatttgaa gatgaagctg aaaattctct tacacaggta gaatctaaca 1201 gccagactgg tggcaacagc caagatggcg gaggagatat taacttactg ttgttacaaa 1261 ctagtaatag gcgtgctaca atgcttgcaa aatttaaaga ttggtatggg gtttcatata 1321 atgaaataac tagagtttat aaaagtgata agtcttgtag tgataattgg gttatagtta 1381 tctttcgagc tgctgttgaa gttttggaaa gctctaaaat tgttttgcaa cagcactgta 1441 catatattca agttaaaata tttggatttt cagctttata tttattacaa ttcaaaagtg 1501 cgaaaagcag agaaacggta caaaagttaa tgtgttctat gttgaatatt caagagtttc 1561 aaatattgac tgaccctcct aagttacgaa gtgtgcctac agctttatac ttctataagc 1621 aagccatgtt aacagagagc tttgttttcg gacagacacc agattggatt gcaaagcaaa 1681 ccttagtaag ccatcaagca gcaactactg cagaaacatt cgaattatca aaaatggttc 1741 agtgggctta tgataataat ctgctggaag aatgtgatat tgcgtatcat tatgctatgt 1801 atgctgatga agatgctaat gctgcagcct atttaaagag taataatcaa gtaaaacatg 1861 ttagagattg cagtacaatg gttagaatgt ataaaagata tgaaatgagg gatatgtcaa 1921 tgtcagaatg gatttataaa tgttgtgatg aatgcaccga agaaggtgat tggaaaccta 1981 tttctcaatt tttaaaatat caaggtgtca atattctttc ttttcttata gttctaaagt 2041 cttttttaaa aggtattcct aagaaaaatt gcatagtcat tcatggccca ccagatactg 2101 gaaaatctct gttttgttat tctctagtga aatttcttaa aggtaaagta gtatcctatg 2161 tgaatcgaag tagccacttc tggttgcagc ctttaatgga ttgtaaggta ggatttatgg 2221 atgatgcaac ctatgtatgc tggacataca tagatcagaa tttgaggaat gcattagatg 2281 gaaatccaat gtgtatagat gcaaaacata gagctccaca gcaattaaaa ttacctccta 2341 tgttaataac atcaaatatt gatgtgaaac aggaacaatc attaatgtat ttgcatagta 2401 gggtccagtg ttttagtttt cctaataaaa tgcctttttt agatgatggt tctcccatgt 2461 atacatttac tgacgcaacg tggaaatctt ttttccaaaa gcttggcaga caattagagc 2521 taacagatcc tgaagaggaa agcaatggag tccctagtcg cgcgtttcga tgcacttcaa 2581 gaagcaattc tgactcatat tgagtctcag gacgatactt tggaatccca aattcgatat 2641 tgggaaaata tcagaaaaga aaatgcaata atgcattttg cacgaaaaca aggcctaaca 2701 aaattaggtc tgcaaccact tcccacatta gcagtaactg aatataatgc aaaacaagca 2761 atacaaatac atttgacttt gcagtcatta ttaaagtctc cttatggatc agagcgttgg 2821 actctgccag aagttagtgc agaactgatt aatactgctc cacagaactg tctaaagaaa 2881 ggaggttatg atgtgtctgt atggtttgat aatgatagat ataatgctat ggtgtataca 2941 aattgggatt atctatatta tcaagatgtc aatgaaatat ggcataaagt taaaggtgaa 3001 gtggattatg atggcttata ctttacagac catacaggag aacgtgcata ctttactctg 3061 tttagcacag atgctcacag atttagcaga actggactat ggactgtgca ttttaaaaca 3121 caagttattt cctcctctgt tgtcagctca acaaacaccc cctccttcga ctttgaggaa 3181 caacaactac ccgggccctc aacacccacc tacaccgagc ttacccaggc gagcccttgt 3241 ggtaggggga aatcgaggga atctcaaccg acctccacaa cgtcccccga aacctcgggg 3301 ctacgagtac gacgaggacg acgacaaaga aaatcagggc ccgggccagg agagaccccc 3361 agcaaaagaa gaagaggagg agggagagga ggaggagaga ccagattgga gtctgcgcca 3421 tctcctgggg aagtgggaat cagacataga acagttgaaa gacaaggtct gtcgcgactt 3481 ggacaactac aagctgaagc tagggatcca cccatgatat tgttaaaggg cacagcaaat 3541 tcgttgaaat gttggagata taggaaacaa aattccagta actgtgggtt tctctttatg 3601 agcactgttt ggaactgggt tggtgatgtg tcagaaaatc acagtcgcat gttaattgct 3661 tttaaaagtc ctggtcagag agactcattt gttaaacaca atctattccc aaaactctgt 3721 acatatacct atggttcttt aaatagctta taaaatgcaa gcctcacgca gaacaaaaag 3781 agactcaata ccaaacctct atgcaaaatg tcaattatct ggcaactgtc ttcccgatgt 3841 aaaaaataaa gtagaagctg atacccttgc tgatcgtttg ctcagatggt tgggaagtgt 3901 catatactta ggaggtttgg gaattgggac gggaagaggc agtggagggt cttctggtta 3961 taatccactg ggagccccta gcagagtaac acctagtgga actgttataa gaccaacagt 4021 ccctgtagaa ggtctggggc ctagtgaaat catccctgta gatgttgtaa accctggcag 4081 ttcttctgtg gttcctttag aggatttaac agttccagaa gtcaccatag atagcgggga 4141 ggtgggagga ggtggtcttc atccttctga gatagatgtt gtcacttcct cagaccctat 4201 ttcagatgtc actggtacaa gtagccaccc tacaataata tctggcgaag ataacgccat 4261 tgcagtccta gatgtttctc caacagagcc ccctaccaaa cgcatagctt taggaactag 4321 gggcgcaaca tcaacaccac atataagtgt aatatcaggc acgaccgaat tcggtcagtc 4381 ttcagaccta aatgtgtttg ttaatgccac attttctgga gattctattg gatatacaga 4441 agaaattcct ttagaagagt tgaatactat ccagcaattt gaaatagaaa cccctccaaa 4501 aactagcaca ccacgtgaga ctattggacg tgctttggaa agagcgcgag atctttataa 4561 cagaagagtg cagcagatag ccactagaaa tccagcaatg ctaggacagc cttcccgcgc 4621 aatagttttt ggatttgaaa atcccgcctt tgacgctgac atcactcaag tatttgagcg 4681 ggacttggaa caggttgcag cagctccaga tgctgatttt gctgatatag tcagaatagg 4741 gcgtccaaga ttttctcaga cagacactgg gcaaattaga attagcagac ttgggcgccg 4801 aggaactatt aaaactagaa gtggtttgca aattggtcag gctgtgcatt tttattatga 4861 cttgagtaca atagacactg ctgatgcaat tgagctatct acacttggtc agcattcagg 4921 agaacaaagc attgtagatg caatgataga gagcagtttc gtagatccct ttgaaactcc 4981 tgatcctaca tacacagaag agcaacagct tctagatccc cttacagagg attttagcaa 5041 ctctcacttg gttttaacta gcagtagacg tggatcttca ttcagtatcc ccactattcc 5101 tcctggttta ggcttgagaa tttatgttga tgatgtaggc tccgatttat ttgtatctta 5161 cccagaaaca agagttatac ctgcgggagg cttacctact gagcctttta ccccgttaga 5221 gcctccattt ttttcagagt tttacagttc tgactttgta tatcgtccta gtttgtatcg 5281 caagaaacga aaacgatcag atatatttta attttttgca ggaacatggc gagttggtta 5341 tctgcaaagg gtaaagtgta cctacctccc gctcaacctg tggcaagagt tttggaaact 5401 gacgaatata tcactggaac atctctttat ttccacgctg gaacagaaag gcttttaact 5461 gtaggccatc cttattttcc agtgaaagat gtgcaggatc aacacaaggt tttagttcct 5521 aaagtttctg gaagtcagta tagagttttc agattctatt taccagatcc taataggttt 5581 gcattgattg ataatggttt ctatgattct gaccatgaac gtcttgtttg gagactcaga 5641 ggaatagaaa taggtagggg tggtcccctt gggattggaa caacaggcca tcctttatat 5701 aataagtttg gagattcaga aaatcctaat ggatacagga aacaatcaga tgacaacaga 5761 caggatgttt ctttagatcc aaaacagaca caaatgttta tcataggttg cactcctgct 5821 attggggaac attgggataa ggctgagcct tgtgcaagtc ctgttcctca accaggagat 5881 tgtcctccta tagagcttgt gaacacatat attgaggatg gggatatgtg tgatattggt 5941 tttggagctt ttaattttaa agctttgcag caggataaat ctagcgctcc attggatgta 6001 gttgctacaa tgtgcaaatg gccagatttt ctaaaaatga gtaaagatgt ctatggagat 6061 agcttattct tttatggtag gcgagaacag ttatatgcca ggcacttttt tgttagagca 6121 ggagcaatgg gagatgcact accagaacct ttcgaggtta aaactgatta ctggattcct 6181 gctcaagaag gtcaggatca gaatacttta ggtccacata tatatatagg cactcctagt 6241 ggatctttag tttcaagtga gtcccagtta tttaatcgac cgtattggtt aaacagagct 6301 cagggtacaa ataatggaat atgctgggat aatcaattat ttgtgacact tgttgacaat 6361 actcataata ctaattttac tatttctgta aaaacagaag cagctgatga atcctataaa 6421 tataaagcag gtgattttaa acagtattta agacacattg aggagtttga aatggaattt 6481 atttttcagc tttgcacagt tcctcttaca gccgatgtca tggctcactt aaatgtaatg 6541 aatcctaata tcttagacaa ttggcaatta aattttgtgc cccctcctcc ttcaggaatt 6601 gaggatcaat atagatttat acaatccaga gctacgagat gtcctactca gtctcccagt 6661 actgaaaagg aagaccctta taaagattta tcattttggg gtgtagattt aacagaaaga 6721 ttttccagtg aacttagcca attttcctta gggagacgct ttttatatca aagtggttta 6781 attaatggaa cacttaaaag aaaacgtact attaattctc aagctccaac tagtattaaa 6841 cgttctgcca aacgaaaacg gtctattaaa cagtagatta atccttataa gaatgcattt 6901 gttctgccaa tagaaactta aactgagcca attattatat aatctttgga aacgtgtatg 6961 tatttgcttt ttctgtgaga aacttgagta aaataaactg ccacattctt gccactgtcc 7021 atattgtctg actcattggt caacatgtgt gtccgcaccc cagtaattac ctggatcgcc 7081 tccacatccg tcggatgcgc gccaaaagag gaacgtcccc ttctattttt ctaaaaaatt 7141 accgtttctg cagctgcaaa attgtgtaag accgttatcg ttccctgtaa ccttggcaca 7201 aaaggtgagt gaaagtttta tagtaacgtt tatgagtcaa tttgtctggc ggcgctgaac 7261 gaatttggct gtcagccttt gcaccgggag tggtagaaaa tagtttct //