LOCUS X70828 7348 bp DNA linear VRL 18-APR-2005 DEFINITION Human papillomavirus type 63 complete genome. ACCESSION X70828 VERSION X70828.1 KEYWORDS complete genome; ORF E1; ORF E2; ORF E4; ORF E6; ORF E7; ORF L1; ORF L2. SOURCE Human papillomavirus type 63 ORGANISM Human papillomavirus type 63 Viruses; Papillomaviridae; Firstpapillomavirinae; Mupapillomavirus. REFERENCE 1 AUTHORS Egawa K., Delius H., Matsukura T., Kawashima M., de Villiers E.M. TITLE Two novel types of human papillomavirus, HPV 63 and HPV 65: comparisons of their clinical and histological features and DNA sequences to other HPV types JOURNAL Virology 194(2), 789-799(1993). PUBMED 8389082 REFERENCE 2 (bases 1 to 7348) AUTHORS Delius H. JOURNAL Submitted (27-JAN-1993) to the INSDC. H. Delius, Deutsches Krebsforschungszentrum, Abt ATV, Im Neuenheimer Feld 506, W -6900 Heidelberg, FRG FEATURES Location/Qualifiers source 1..7348 /organism="Human papillomavirus type 63" /mol_type="genomic DNA" /db_xref="taxon:28311" CDS 102..527 /note="putative E6 ORF" /db_xref="GOA:Q07855" /db_xref="InterPro:IPR001334" /db_xref="InterPro:IPR038575" /db_xref="UniProtKB/Swiss-Prot:Q07855" /protein_id="CAA50164.1" /translation="MDLTSVHSVRDLSSALRIPFIDLVVPCNFCLKFLTNAEKLLFDY FDLHLIWRDNFVFACCQCCARHVSLLEFMLYYQESFEVSEVEELLNQPLVNIGLRCVT CTKKLTVSEKLAVVSAGERVHKVRNKFKAKCSLCRLYII" CDS 554..820 /note="putative E7 ORF" /db_xref="GOA:Q07858" /db_xref="InterPro:IPR000148" /db_xref="UniProtKB/Swiss-Prot:Q07858" /protein_id="CAA50165.1" /translation="MVGEQPNIGDLVSQEEPSVLDLNCYEDIPAEEEESEYPYAIVLP CGLCDQLLRLTCVSDLSTLTRLEELLLGSLRIVCPLCAIRHQRH" CDS 822..2678 /note="putative E1 ORF" /db_xref="GOA:Q07847" /db_xref="InterPro:IPR001177" /db_xref="InterPro:IPR014000" /db_xref="InterPro:IPR014015" /db_xref="InterPro:IPR016393" /db_xref="InterPro:IPR027417" /db_xref="UniProtKB/Swiss-Prot:Q07847" /protein_id="CAA50166.1" /translation="MTDRGTNNDDWYIVDEAECRDDDESELEDLEDTYNSLFNRSESD ISDLLDDTQQSQGNSLELFHLQEHLQNEQDLNTLKRKYLNSPPQASATETACNSLSPR LESITISQREKKARKQLFTQNDSGIELSLCQDEVDNINEALQEQVDIVQSLGGGVRDC IGVDILKCSNTRSALLAKFKDTVGVSFTDLTRAYKNNKTCCSYWVIAVWGVTSTSVDV VKTVFQVQCNYMHVEHCLTEKNKFLIVLAGFKAQKSRETVLNLVTSSLNVQSNYIMAE PPKNRSMAAALYWYRRSMSPAVYTWGEMPDWMAQQTLLNHQLASEKHFELSQMVQWAY DNGYTDESDIAYYYAILAEEDENAKAFLASNAQAKYVKDCARMVSHYKRAEMSSMSMS AWIYKRLEEVENGGDWKHIVKFLRFQEVEFISFMIAFKELLSGKPKKNCLVIYGPPNT GKSMFCMSLLRVLKGKVISYVNSKSQFWLQPLASTKIALLDDATKPAWDYIDLFLRNA LDGNPICVDLKHKAPQQIKCPPLMITSNINVKADVCWMYLHSRITCFEFKQPFPFDEN GQPAFSLTDINWKSFFERFWSQLDLSDQEDEESDGKPQQPLRLATRAASNSI" CDS 2620..3816 /note="putative E2 ORF" /db_xref="GOA:Q07850" /db_xref="InterPro:IPR000427" /db_xref="InterPro:IPR001866" /db_xref="InterPro:IPR012677" /db_xref="InterPro:IPR033668" /db_xref="InterPro:IPR035975" /db_xref="InterPro:IPR036050" /db_xref="InterPro:IPR042503" /db_xref="InterPro:IPR042504" /db_xref="UniProtKB/Swiss-Prot:Q07850" /protein_id="CAA50167.1" /translation="MESLNNRLDWLQEQLLTLYEKDSKDIEDQIMQWNLLRQEQVLFH YARKKGIMRLGLQVVPSLAASQDKAKTAIEMTLYLSGLRDSQYGSEQWSLQDTSREIF LAPPDHTFKKGGQTIEVIYDEDPNNSTRHTVWRHIYYQNGDNRWRKAASDVDVHGVFY LEYDGVKNYYVDFQEEANRYSKTGRYTVQYEGKRFTNVMSPVNSSPLRTSGSPTDTNP ATQGQSTQTARKAETKGSRHHPKSPAVRKRRPYGRRRSRSPRDTTLRRGEGESARASA GSGERVAFISPGDVGTSTRSPPKGGQSRLRRLIQEARDPPIICLKGGPNQLKCLRYRI KASNSSDFESISTTWHWVHNKCTDRVGHARMLVRFISTEQRDRFLDKVVVPKSVSVIL GAFDGS" CDS 3104..3571 /note="putative E4 ORF" /note="no ATG" /db_xref="GOA:Q07853" /db_xref="UniProtKB/Swiss-Prot:Q07853" /protein_id="CAA50168.1" /translation="NMMVSKTTMLTFKKRPIDIAKQVDILFNMRVKGSQMLCLLSIAP HYGLLGLLQTPTQPPKDNPPKLPEKQRRRGRDTTRNRRLFASDGPTDEEGPEVPEIPP SDEEKENRPEPLPVVENGWHSFLRETLEHQLGRLQREVNQDFEDLYRRLGIHP" CDS 3846..5360 /note="putative L2 ORF" /db_xref="GOA:Q07863" /db_xref="InterPro:IPR000784" /db_xref="UniProtKB/Swiss-Prot:Q07863" /protein_id="CAA50169.1" /translation="MLRVRKRRAAPQDIYPACKVANNCPPDIQNKIEQTTVADKILQY GSLGIFLGGLGIGTGKGGGGRYGYTPLGDSGAVRVGGRSTPVRPTVPVETVGPRDILP IDSLDPLGPSVIELEDIPATTVEVVAEVHPISDTPQIPAPTTDESSSAVLHIPQESPA ARTITRSQYNNPLFRITASADIASGEASASDNIFIDVDTPGQIVGQEIPLVNFDMGPI STEGELETEFTTSTPRTTQVQERPTRFYNRRYYEQVPVTAPEFITRPASLVTFENPAF ERSVSLIFEQDLEDILNAPDQDFRDIVYLSRPTYSRAPDGRMRLSRLGRRATISTRSG VTIGAQSHFYMDISSISSNDGIELQTLGEASGETVVQSSLAASDPIEAEHSFIEPAPS IDSYDIVSLQSETYSDEHLLDMYEPVGSSLQLQISDVRGRPTVIDIPFRPRRPPLGPI NAGVDIYSPTASVGSPTINPTDLDIPLIIIHLDNSTGDYDLHPSLRKRRKLVHI" CDS 5371..6894 /note="putative L1 ORF" /db_xref="GOA:Q07861" /db_xref="InterPro:IPR002210" /db_xref="InterPro:IPR011222" /db_xref="InterPro:IPR036973" /db_xref="UniProtKB/Swiss-Prot:Q07861" /protein_id="CAA50170.1" /translation="MAVWLPAQNKFYLPTQPITKILSSDDYVSRTNIFYHATSDRLLI VGHPLYEVTRANDNTMTVPKVSPNQYRVFRVRFPDPNRFAFGDKDIFDPETERLVWGL RGIEIGRGQPLGVGISGNPLLNRFDDAENPSRYNNTHATGDNRQNVAFDAKQTQMFLI GCTPATGEHWSIARRCAGTQFQLGDCPPIELVNTVIEDGDMFDIGLGAMDFGSLQANK ADAPLDIAGTVCKYPDYIKMGQEVHGNSLFFFARREQMYLRHVFTHAGIVSEKEKVPT SAYIAAKAEQPQNTIATDNYFVAPSGSLVSSDVQIFNRPYWLQRSQGQNNGICWRNEL FVTVADNTRGTTMNINVLNKATPETYDSADYNEYTRHVEEYELSFIVQLCKVKLTPEN LAFLHNMDPTIIDSWQLTVSQPPANAIEDKYRFIESLATKCPDNVPPPTPTDPYKDLR FWDVDLSERMSEQLDQFPLGRKFLYQSGLAQRSVPKTVNFRKRRSSNTTVAKRRRRA" BASE COUNT 2239 a 1359 c 1612 g 2138 t ORIGIN 1 gttaacaact atcaggcgat tctctagttc taacacgaac gtttacggtc gttgccagct 61 ttttccttat aaaactctgg tgggaatttc tcttgggaca gatggacctg acatctgtac 121 attcggttcg ggatctgagt tctgctctcc gtatcccatt tattgatttg gttgttcctt 181 gcaatttttg cttgaaattt cttacaaatg ctgaaaaatt gctgtttgat tattttgact 241 tgcatcttat ctggcgagat aatttcgtgt ttgcttgttg tcagtgctgt gctaggcatg 301 ttagtctgct tgagtttatg ctttattatc aggagtcttt cgaggtatct gaagtagaag 361 aattacttaa tcaacctctt gtaaatattg gtttaaggtg tgttacatgc acaaaaaaac 421 tgactgtttc agaaaagtta gctgttgttt ctgctggaga aagagttcat aaagtaagga 481 acaaattcaa agcaaagtgc agtttgtgca gactctacat tatatagttt gtgcagactc 541 tatataatta acaatggtgg gagagcagcc aaatataggt gatttggtga gtcaagaaga 601 accaagcgtc ctagatctaa attgttatga ggatatacct gctgaggagg aggagtctga 661 atatccatat gcaattgtgc ttccttgtgg tttgtgcgat cagctgttaa ggctgacctg 721 cgtttctgac ctgtctactc ttacgcgtct ggaggagctg ctgttaggct cactgaggat 781 cgtgtgtccc ctgtgtgcca ttcgacacca acgacactaa gatgaccgac agaggtacaa 841 ataatgatga ttggtatatt gtggatgagg cagaatgtcg ggatgatgat gagagcgaat 901 tggaggattt ggaggacacc tataattcat tgtttaatag atctgaaagt gacatatcag 961 atctattaga cgatacgcag caaagtcagg gaaattccct ggaactgttc cacttacagg 1021 agcacttgca gaacgagcag gacctaaata ccctaaaacg aaagtactta aacagtcctc 1081 cgcaggcaag tgccacagag actgcctgca atagcctcag tcccagattg gaatctataa 1141 caatttcgca gagggaaaaa aaggcaagaa agcaactatt tacacaaaat gacagtggca 1201 tagagttatc gctatgccag gatgaagttg acaatattaa cgaagcgctt caggagcagg 1261 tagacatcgt acagtctctg ggaggtgggg tgcgtgactg tataggagtg gacattttga 1321 aatgcagtaa tacaagatct gctctacttg ccaaatttaa agacacagta ggtgtcagtt 1381 ttactgacct caccagagca tacaaaaaca acaagacatg ctgtagttac tgggtcatag 1441 cagtgtgggg agtaacatct acgtctgtgg acgttgtgaa aactgtattc caagttcagt 1501 gtaattatat gcatgtagaa cattgtttaa ctgaaaaaaa taagtttcta attgtattag 1561 ctggctttaa agctcaaaaa agtagagaaa cagtgttaaa tctcgtaact agcagtttga 1621 atgtgcaaag taattacata atggctgaac caccaaaaaa tagaagtatg gcggcagcgt 1681 tatattggta taggagatct atgtctccag ctgtatatac ctggggagaa atgccagatt 1741 ggatggcgca gcagacattg ttgaatcatc aattagcatc agaaaagcat tttgaattgt 1801 cacaaatggt acaatgggct tatgataatg gctatacaga tgaaagtgat attgcatact 1861 attatgctat tttagcagaa gaagatgaaa atgcaaaagc attcttggct tctaatgcac 1921 aagcaaaata tgttaaggac tgtgctagaa tggttagtca ttacaaaagg gcagaaatga 1981 gtagtatgtc tatgtcagca tggatttata aaagactgga ggaagttgaa aatggtggtg 2041 actggaaaca tattgtaaag ttcttgaggt ttcaagaagt agaatttata agtttcatga 2101 tagcatttaa ggaattgtta agtggtaaac caaagaaaaa ttgtcttgta atatatggtc 2161 caccaaatac tggtaaatct atgttttgta tgagtttgtt gagagtatta aaaggaaaag 2221 taatatctta tgtaaatagc aaaagtcaat tttggttgca accactagct agcactaaaa 2281 tagcattatt agatgatgca acaaaaccag catgggatta tattgattta tttttgagaa 2341 atgctttaga tgggaatcct atttgtgtag atctgaaaca taaggcacca caacaaataa 2401 aatgtcctcc acttatgata acttctaata taaatgttaa ggctgatgta tgttggatgt 2461 atttacatag taggataaca tgttttgaat ttaaacaacc ttttccattt gatgaaaatg 2521 gtcaaccggc attttcctta acagacatca attggaaatc tttttttgaa aggttttgga 2581 gccagttaga cttaagtgac caagaagacg aggagagtga tggaaagcct caacaaccgc 2641 ttagactggc tacaagagca gcttctaact ctatatgaga aagacagtaa agatattgaa 2701 gatcagataa tgcagtggaa tctacttaga caggaacaag tgttattcca ctatgcccga 2761 aaaaagggaa taatgcgact tggcctgcaa gttgtgcctt cccttgcagc ttcccaggat 2821 aaagcaaaaa cagctataga aatgactctt tatcttagtg gcctcagaga ctcacaatat 2881 ggttctgaac agtggtcttt acaagatact agcagagaaa tctttttagc accaccagat 2941 catacattca aaaagggagg gcaaacaatt gaggtaatct atgatgagga tcccaataat 3001 agcaccagac atactgtatg gcgccatata tattatcaaa acggtgataa cagatggaga 3061 aaagcagcta gtgatgtaga tgttcatggt gtgttttatt tagaatatga tggtgtcaaa 3121 aactactatg ttgactttca agaagaggcc aatcgatata gcaaaacagg tcgatatact 3181 gttcaatatg agggtaaaag gttcacaaat gttatgtctc ctgtcaatag ctccccacta 3241 cggacttctg ggtctcctac agacaccaac ccagccaccc aaggacaatc cacccaaact 3301 gccagaaaag cagagacgaa ggggtcgaga caccacccga aatcgccggc tgttcgcaag 3361 cgacggccct acggacgaag aaggtccaga agtcccagag ataccaccct cagacgagga 3421 gaaggagaat cggccagagc ctctgccggt agtggagaac gggtggcatt catttctccg 3481 ggagacgttg gaacatcaac taggtcgcct ccaaagggag gtcaatcaag acttcgaaga 3541 cttatacagg aggctcggga tccacccata atttgtctga aggggggccc taatcaactt 3601 aagtgcttaa ggtataggat taaagcttca aattcatctg actttgaaag tatcagtact 3661 acatggcatt gggtacataa taaatgcaca gatagagtag gtcatgcacg tatgctggtg 3721 cgttttatat caacagaaca acgtgaccga tttttagata aggtggtggt gcctaaatct 3781 gtttctgtta ttttaggggc atttgacggt tcctaagggt gggtgttggg gtatattttg 3841 taatcatgtt aagagtacgt aaacgacgag ctgctccaca agatatttat cctgcttgta 3901 aggttgcaaa caattgcccc cctgatatac aaaataaaat tgaacaaaca acagttgctg 3961 acaagatttt acaatatggg agtttgggaa tattcctggg aggtttgggt attggtactg 4021 gcaagggtgg gggtggccgg tatggttata cacctctagg ggacagtggt gcggtgcgag 4081 ttggtggcag aagtacacct gtaagaccaa cagtacctgt ggagactgta ggaccaaggg 4141 atatattacc tatagattca ttggatcctt tagggccctc agtcattgaa ctagaagata 4201 ttccagccac aacagtggaa gtagtggctg aagtgcatcc catatctgat actccacaaa 4261 taccggcacc tactactgat gaatctagtt cagctgttct tcatattcca caagaaagtc 4321 ctgctgcacg tacaatcaca cgttcccaat acaataatcc tttattcagg atcacagcta 4381 gtgcagacat agcatcaggt gaagcttcag catctgataa tatttttata gatgtagata 4441 cgccgggtca aatagtagga caagaaatac cactagttaa ttttgatatg ggacctatat 4501 ctactgaagg tgagcttgaa actgagttca caactagtac accaagaacc acacaagtac 4561 aggaaaggcc tacacgtttc tataatagac gctattatga acaagtgcca gttactgcac 4621 ctgaatttat cacaaggcct gcttccttag ttacttttga gaatcctgca tttgaaagga 4681 gtgtttcttt gatttttgaa caagatttag aagatatttt aaatgctcct gatcaggatt 4741 ttagagacat tgtttattta agcagaccaa catacagtcg tgcccctgat ggccgcatgc 4801 gcctaagccg cctgggacgc agagccacta taagtaccag aagtggtgtt actataggtg 4861 ctcaatcaca cttttatatg gatattagct ctatctcctc aaatgatggc attgagttac 4921 aaacactggg tgaagcttct ggcgagactg tggtgcaaag ttctcttgct gcatcggatc 4981 ctattgaagc agaacattca ttcattgaac cagcaccatc tatagatagt tatgatattg 5041 tttcacttca gtctgagact tattcagatg aacatttgtt agatatgtat gaacctgtag 5101 gttcttcctt gcaattacaa atatcagacg tcagaggtcg gccaactgtt attgatattc 5161 cctttagacc ccgcaggcct ccattaggtc ctataaatgc tggtgttgat atctatagtc 5221 caactgctag tgttggatca cctactataa atcctactga tcttgacatt ccattaatta 5281 ttatacattt agataattca acaggggatt atgatttaca tccaagtttg cgtaaacgtc 5341 gcaaattagt tcatatttga tattttacag atggctgttt ggcttcctgc ccagaataag 5401 ttttaccttc ctacccaacc gatcaccaag attctaagca gcgatgatta tgtgtctcgc 5461 accaacatct tctatcacgc taccagtgat cgactgctca ttgtgggaca cccgctctat 5521 gaggttaccc gtgcaaatga taacactatg actgtgccta aagtttctcc aaatcagtat 5581 agagtctttc gtgttagatt tccagatcct aaccgatttg cctttggaga taaggatatt 5641 tttgacccag aaactgagag actagtttgg ggtcttagag gcatagaaat cggtaggggt 5701 caaccattag gtgtgggtat ttcaggcaat ccattattaa ataggtttga tgatgctgaa 5761 aatcctagca gatataataa tacacatgca actggtgata ataggcaaaa tgttgctttt 5821 gatgcaaaac aaacccaaat gtttctaatt ggctgtacac cagccactgg ggaacactgg 5881 tcaatagctc gacgctgtgc aggaacacag tttcagcttg gagattgtcc tcctatagaa 5941 ttagttaaca cagttattga ggatggtgat atgtttgaca taggtctagg tgctatggac 6001 tttggttctt tgcaagcaaa caaagcagat gctcctttgg atattgcagg cactgtctgc 6061 aaatatccag attatattaa aatgggacag gaagtacatg gtaattctct gtttttcttt 6121 gctcgcagag aacaaatgta tttaaggcat gtatttacac atgctggaat tgttagtgaa 6181 aaagagaaag tccctaccag tgcatatatt gctgctaaag ccgagcaacc ccaaaatact 6241 attgctacag ataattattt tgtagctccc agtggatctt tagtgtcctc tgatgtgcaa 6301 atttttaata ggccctattg gttacaacgt tctcaaggac agaacaatgg tatctgttgg 6361 agaaatgagt tatttgtaac tgtagctgat aataccagag gaaccacgat gaatataaat 6421 gttcttaaca aagcaacccc tgagacttat gatagcgcag attataatga gtatactcgc 6481 catgtggagg aatatgagtt atcctttata gttcagcttt gtaaggtaaa actaacacct 6541 gaaaatttag catttttgca taatatggat ccaacaatta tcgattcctg gcagttaaca 6601 gtttctcaac ctcctgcaaa tgctatagag gacaagtata gatttattga atcattagca 6661 acaaaatgtc ctgataacgt gcccccaccc actcctactg atccttacaa agatttacgt 6721 ttttgggatg tagacctcag tgagcgaatg tcggagcagc ttgatcaatt tcctttaggc 6781 cgcaaatttt tgtatcaaag tggtcttgca cagcgttctg ttccaaaaac tgtgaatttc 6841 agaaaacgta gatcctccaa tactactgtg gccaaacgga ggcgacgggc ctgaatatac 6901 atgtgaatgt tgaattatat aatgtgaatt gtgaattctt gactttggca cttgcacttt 6961 attcttggca tactgatact tgaaacttgt tcaatgcttg aaggttacac acctgtacag 7021 tattgttaat aaacgtttat gctgctgtca tttacctgtc ttcgagtcat tattgcctag 7081 tcatatagcc tcatgacttg gcatgcaatt ggtatgtggc agatacttca aacaggatac 7141 tggtatcctt tttggcgcgc gcgcgaattt tgaagttacc actgttccaa cttgttctga 7201 gacgtctgga tctgatcccg accgctgtcg ttactgccaa agacgaaagt ggtaggcgcg 7261 aaccgtttgt ggtttccctg gggctagcag aaactcttta ggttgcgacc gttttcggtc 7321 gggccaataa tctctttcga tcgttgtt //