LOCUS X63976 5151 bp DNA linear BCT 14-NOV-2006 DEFINITION Escherichia coli K12 valU, gltX and alaW region. ACCESSION X63976 X55757 X63977 VERSION X63976.1 KEYWORDS glutamyl-tRNA synthetase; open reading frame; orf294; transfer RNA-Ala; transfer RNA-Lys; transfer RNA-Val. SOURCE Escherichia coli ORGANISM Escherichia coli Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 1879;3290 to 5151) AUTHORS Brun Y.V., Breton R., Lanouette P., Lapointe J. TITLE Precise mapping and comparison of two evolutionarily related regions of the Escherichia coli K-12 chromosome. Evolution of valU and lysT from an ancestral tRNA operon JOURNAL J. Mol. Biol. 214(4), 825-843(1990). PUBMED 2201776 REFERENCE 2 (bases 1877 to 3292) AUTHORS Breton R., Sanfacon H., Papayannopoulos I., Biemann K., Lapointe J. TITLE Glutamyl-tRNA synthetase of Escherichia coli. Isolation and primary structure of the gltX gene and homology with other aminoacyl-tRNA synthetases JOURNAL J Biol Chem 261(23), 10610-10617(1986). PUBMED 3015933 REFERENCE 3 (bases 1 to 5151) AUTHORS Lapointe J. JOURNAL Submitted (15-SEP-1992) to the INSDC. Jacques Lapointe, Biochimie, Universite Laval, Pavillon Vachon, Cite Universitaire, Quebec, G1K 7P4, Canada FEATURES Location/Qualifiers source 1..5151 /organism="Escherichia coli" /strain="N99" /mol_type="genomic DNA" /db_xref="taxon:562" regulatory order(12..17,36..41) /function="promoter of orf294" /regulatory_class="promoter" regulatory 57..63 /regulatory_class="ribosome_binding_site" CDS 73..957 /transl_table=11 /product="orf294" /db_xref="GOA:P23841" /db_xref="InterPro:IPR000847" /db_xref="InterPro:IPR005119" /db_xref="InterPro:IPR036388" /db_xref="InterPro:IPR036390" /db_xref="InterPro:IPR037409" /db_xref="UniProtKB/Swiss-Prot:P23841" /protein_id="CAA45390.1" /translation="MERVYRTDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKE LENQLGTQLFIRHSRSVVLTHAGKILMEESRRLLVNANNVLARIEQIGRGEAGRIELG VVGTAMWGRMRPVMRRFLRENPNVDVLFREKMPAMQMALLERRELDAGIWRMATEPPT GFTSLRLHESAFLVAMPEEHHLSSFSTVPLEALRDEYFVTMPPVYTDWDFLQRVCQQV GFSPVVIREVNEPQTVLAMVSMGIGITLIADSYAQMNWPGVIFRPLKQRIPADLYIVY ETQQVTPAMVKLLAALTQ" regulatory 1035..1061 /note="terminator of orf294" /regulatory_class="terminator" regulatory complement(1191..1216) /note="terminator of valU" /regulatory_class="terminator" tRNA complement(1221..1296) /gene="valU operon" /product="lys-tRNA" tRNA complement(1301..1376) /gene="valU operon" /product="val-tRNA" tRNA complement(1423..1498) /gene="valU operon" /product="val-tRNA" misc_difference 1445..1446 /replace="agc" /note="conflict" /citation=[1] tRNA complement(1543..1618) /gene="valU operon" /product="val-tRNA" regulatory complement(order(1636..1641,1658..1663)) /note="promoter of valU operon" /regulatory_class="promoter" regulatory order(1730..1735,1753..1758) /note="promoter1 of gltX gene" /regulatory_class="promoter" regulatory order(1739..1744,1762..1767) /note="promoter2 of gltX gene" /regulatory_class="promoter" regulatory order(1784..1789,1806..1811) /note="promoter 3 of gltX gene" /regulatory_class="promoter" stem_loop 1838..1852 /note="secondary structure of gltX mRNA" regulatory 1865..1869 /regulatory_class="ribosome_binding_site" CDS 1877..3292 /transl_table=11 /gene="gltX" /product="glutamyl-tRNA synthetase" /db_xref="GOA:P04805" /db_xref="InterPro:IPR000924" /db_xref="InterPro:IPR001412" /db_xref="InterPro:IPR004527" /db_xref="InterPro:IPR008925" /db_xref="InterPro:IPR014729" /db_xref="InterPro:IPR020058" /db_xref="InterPro:IPR020751" /db_xref="InterPro:IPR033910" /db_xref="UniProtKB/Swiss-Prot:P04805" /protein_id="CAA45391.1" /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDT DLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSK ERLEALREEQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPI EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALK APVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEI FTREEMIKYFTLNAVSKSASAFNTDKLLWLNHHYINALPPEYVATHLQWHIEQENIDT RNGPQLADLVKLLGERCKTLKEMAQSCRYFYEDFAEFDADAAKKHLRPVARQPLEVVR DKLAAITDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGK TRSIERINKALDFIAERENQQ" regulatory 3313..3335 /note="terminator of gltX gene" /regulatory_class="terminator" CDS complement(3344..3736) /transl_table=11 /product="orf130" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR009061" /db_xref="InterPro:IPR010749" /db_xref="UniProtKB/Swiss-Prot:P27238" /protein_id="CAA45392.1" /translation="MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGG RARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTD IEQEKVAQFLSREGIRNFLARLDIDESA" CDS 3539..3727 /transl_table=11 /product="orf62" /db_xref="UniProtKB/TrEMBL:Q79AM8" /protein_id="CAA45393.1" /translation="MEGWRVLNKLANLRIDQNKSGTTAFHAGKFFRFPAFFSDPTVNS LFSHTEAFSQFFGGHFIA" CDS complement(3738..4055) /transl_table=11 /product="orf105" /db_xref="InterPro:IPR009061" /db_xref="InterPro:IPR010749" /db_xref="UniProtKB/Swiss-Prot:P0AD37" /protein_id="CAA45394.1" /translation="MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKADWFTS MNRFVNIFAMLNVQKVREKRLPFLVTLAKEMTPVEQKQFTSLLLREGIIGLLQRLGIR DSK" tRNA 4291..4366 /gene="alaW operon" /product="ala-tRNA" tRNA 4406..4481 /gene="alaW operon" /product="ala-tRNA" regulatory 4490..4511 /note="terminator of alaW operon" /regulatory_class="terminator" CDS 4630..5133 /transl_table=11 /product="orf167" /db_xref="GOA:P23842" /db_xref="InterPro:IPR000160" /db_xref="InterPro:IPR001633" /db_xref="InterPro:IPR007895" /db_xref="InterPro:IPR029787" /db_xref="InterPro:IPR035919" /db_xref="UniProtKB/Swiss-Prot:P23842" /protein_id="CAA45395.1" /translation="MRINLLFVCLKTPISESSVLMFVEHNLIKNIKIFTLAFTLTVVL IQLSRFISPLAIIHSSYIFLAWMPLCVMLSILFIFGWRGVVPVLCGMFCTNLWNFHLS FLQTAVMLGSQTFVVLCACAILRWQLGTRLALWIDQPICLATSVLAWFGDADRHQMQH VSCGELL" BASE COUNT 1219 a 1232 c 1320 g 1380 t ORIGIN 1 gatatctggt ggtgaaatac tttatgccat gataatttaa tacgatgtat ttattatatg 61 gagcacttaa ttatggaacg cgtatacaga acagatctta agttgctccg ttattttctt 121 gccgtagcgg aagagttgca ttttggccgc gcagcagcgc gtttaaatat gtctcagcct 181 ccgctcagca ttcatattaa agagctggaa aatcaactcg gcacgcagct ttttattcgc 241 cattcgcgca gcgtcgtact gacacacgcg ggcaaaatct tgatggaaga atcgcgtcga 301 ttgctggtga atgctaataa tgtattggct cggattgaac aaataggtcg gggagaagca 361 gggcggattg aactcggcgt agtgggaacg gcaatgtggg gacggatgcg cccggttatg 421 cggcgattcc tcagggaaaa tcctaacgtt gacgttcttt ttcgcgaaaa gatgcccgcg 481 atgcaaatgg ccttgctgga acgccgcgaa cttgatgccg ggatctggcg aatggcgaca 541 gaaccaccga ctggttttac cagcttacgg ttgcatgaat cggcgtttct ggtggcgatg 601 cctgaagagc atcatctctc atcattttcc accgtcccgc tggaagcgct acgtgacgag 661 tattttgtta caatgccgcc cgtttacact gactgggatt ttttgcagcg agtttgccag 721 caggtgggat tttcaccggt tgttattcgc gaagttaatg aaccgcaaac ggtactcgct 781 atggtcagta tgggcattgg tatcacattg atagcggaca gctacgcaca aatgaactgg 841 ccaggtgtca ttttccgtcc gctcaaacag cgcatccctg cagatttata tattgtttat 901 gaaacacagc aggtgacgcc cgcgatggtt aagctgttgg ctgcattgac acagtaggtg 961 aggagacagg aattgccgga aatagtagtc tgctaagtga agcgcatcag gcaatttcgc 1021 aaatcgcaga tagcaaaaaa cggcctttag ggcgcttttt tacattggtg ggtcgtgcag 1081 gatgactcgc ttcgctcgcc cttcgggccg tcgccgcgag cggctccgtt gtttcgctgc 1141 gctcaactca aacctgctgc aggttcgaat ctttgagtat cgcagatagt aaaaaagcgc 1201 ctttagggcg ttttttacat tggtgggtcg tgcaggattc gaacctgcga ccaattgatt 1261 aaaagtcaac tgctctacca actgagctaa cgacccgaag tggtgggtga tgacgggatc 1321 gaaccgccga ccccctcctt gtaagggagg tgctctccca gctgagctaa tcacccactt 1381 cggtacttca catttttaca agaaatttag ctggcgagaa agtggtgggt gatgacggga 1441 tcgaaccgcc gaccccctcc ttgtaaggga ggtgctctcc cagctgagct aatcacccac 1501 ttctcaattt cttgctacac ggcggagact acataaagta gttggtgggt gatgacggga 1561 tcgaaccgcc gaccccctcc ttgtaaggga ggtgctctcc cagctgagct aatcaccccc 1621 gctgtgtgga gtcgcattat agggagagtt caaaatgagt caacgcattt tctaaagaaa 1681 ttgttcgttc gtcgtaaatt taagcaagat gatcgcaaaa cagaccgtgt tgcgcaattt 1741 gtcaacgaaa acaataatgc gtaaggtaga aacccgaact acattgagga atcaggcggg 1801 agtgatagaa tatcgcccac ttaatttttc caggatttgc cggttgtcgg catctttcta 1861 aacgtaaggc catttcatga aaatcaaaac tcgcttcgcg ccaagcccaa caggctatct 1921 gcacgttggc ggcgcgcgta ctgctcttta ctcctggctt tttgcacgta accacggcgg 1981 tgagttcgtg ctgcgtattg aagacaccga tcttgagcgt tccacgccgg aagctatcga 2041 agccattatg gatggcatga actggctgag cctggagtgg gatgaaggtc cgtactacca 2101 gaccaaacgt tttgatcgct acaacgcggt gatcgatcag atgctggaag agggcactgc 2161 ttataaatgc tattgctcta aagagcgcct ggaagcgctg cgcgaagagc aaatggcgaa 2221 aggtgagaag ccgcgttatg acggtcgctg ccgccacagc catgagcatc atgctgatga 2281 tgaaccgtgt gttgtacgtt ttgctaaccc gcaggaaggt tctgttgttt ttgacgatca 2341 gatccgtggt ccgatcgagt tcagcaacca ggaactggac gatcttatta tccgccgtac 2401 cgatggttcc ccaacctata acttctgtgt ggttgtcgat gactgggata tggaaatcac 2461 ccacgttatc cgtggcgaag accatatcaa caacacgcca cgccagatca acattcttaa 2521 ggccctgaaa gcgccggtgc cggtttacgc gcacgtttct atgatcaatg gcgatgacgg 2581 taaaaaactg tccaaacgtc acggggcagt cagcgtaatg cagtatcgtg atgacggtta 2641 tttgccagaa gcactgctga actatctggt gcgtctgggc tggtcccacg gcgatcagga 2701 aatcttcact cgtgaagaga tgatcaaata cttcactttg aatgccgtca gcaaatctgc 2761 cagtgcgttc aacaccgaca agctgctgtg gctgaaccat cactacatta acgcgctgcc 2821 gccggagtat gttgctactc acttacagtg gcacattgag caggaaaata tcgatacccg 2881 taacggcccg cagctggctg atctggtgaa actgctgggc gaacgctgca agacgctgaa 2941 agagatggca cagagctgcc gttatttcta cgaagatttt gctgagttcg atgccgacgc 3001 cgcgaaaaaa catctgcgtc cggtagcgcg tcagccgctg gaagtggttc gtgacaaact 3061 ggccgcgatt actgactgga ccgctgaaaa cgttcatcac gctattcagg cgacggcgga 3121 tgagctggaa gtgggtatgg gtaaagttgg tatgccgctg cgtgtcgccg taaccggtgc 3181 ggggcagtct ccagcactgg atgttaccgt tcacgcaatt ggtaagaccc gcagtatcga 3241 gcgtatcaac aaagcgctgg attttattgc tgaacgcgaa aatcagcagt aattagcgtg 3301 taaaaagata aacggcagga gataatatcc tgccgttttt tatttatgct gattcgtcaa 3361 tatcgagacg ggcgaggaaa ttgcgaattc cttcacgtga caaaaattgc gcgacttttt 3421 cctgctcaat gtctgtcata ttatctatcg cgttgatgat ttgtcgatac gccggggcgc 3481 gtgctccagg agcgtattca gcaattctct cttcagcttc catcaacatt ggtgtgttat 3541 ggaaggctgg cgtgttctga ataaactcgc aaacttgcgt atcgaccaga ataagtctgg 3601 cacgaccgcc tttcacgccg ggaaattttt ccgttttcca gcctttttct ctgatccaac 3661 ggttaacagt ttgtttagcc acaccgaggc attcagccag ttcttcggtg gtcattttat 3721 tgcgtaatct tttcatatta tttgctatcg cgaatcccta agcgttgtaa caatccgata 3781 atcccttccc gcagaagcaa ggatgtaaac tgtttttgtt caactggcgt catctctttc 3841 gccagtgtca ccagaaaggg caggcgcttc tccctgacct tctggacgtt cagcattgcg 3901 aatatattca cgaacctgtt cattgacgtg aaccagtcgg ctttgccacc ctggacgcca 3961 ggttttggtg acgttgtcca gccttccttg cgtacccatt tattaatggt ctggcggcta 4021 tagccggtca gtctggcaag ttcatctggt gtcatcctct ccttgaacat aacaattccc 4081 tgaatgtatg tgggtctatt agtagttcat tttataacac cactttacag gaaaccgtga 4141 catgaataac tactgaatgc gagcggtttt ccaaaattgt tcatttgcct gatttttcag 4201 cgattgaaac tacacgttgc aatttgccgt tgacacattc gggcggaatt catatgatgc 4261 cgcccgtcaa ctcgacaagc tttacgtgac ggggctatag ctcagctggg agagcgcttg 4321 catggcatgc aagaggtcag cggttcgatc ccgcttagct ccaccaaatt ttgcacccag 4381 caaacttggt acgtaaacgc atcgtggggc tatagctcag ctgggagagc gcttgcatgg 4441 catgcaagag gtcagcggtt cgatcccgct tagctccacc aaatttccaa ccctcgctgc 4501 aaagcggggg ttttttgtct ctgctttttg ccgcttttgt aatacagtct acgtccgggt 4561 tagtgccgcc tggtgaaagc atcattggat gaaaaatcgg caacaggctg gccccctgtt 4621 tgcttcgcga tgcgaataaa cttattattt gtgtgcctga aaaccccgat cagtgagagt 4681 agtgtactca tgtttgtgga gcataacctg ataaaaaata tcaagatatt cacactagcg 4741 tttacgctca ccgtggtact tattcagcta tcccgtttta tttcgccact tgccattatc 4801 cattccagtt atatctttct ggcgtggatg ccactgtgcg taatgctgtc aatcttgttt 4861 atctttggct ggcgcggtgt cgttcccgtt ttatgcggga tgttttgcac caatctgtgg 4921 aactttcatc tctctttttt acagactgcg gtcatgctcg gtagccagac gtttgtcgtg 4981 ttgtgtgcct gcgcaatatt acgctggcag ctggggacgc gtttggcgtt atggattgac 5041 cagccgatat gtctggcaac gtctgttctg gcttggtttg gtgacgccga tcggcatcaa 5101 atgcagcatg tatcttgtgg ggagcttctt tgatttcccg ctaaagatat c //