LOCUS X55285 3014 bp DNA linear BCT 10-DEC-2010 DEFINITION B. amyloliquefaciens bamHIR, bamHIM genes for BamHI endonuclease and BamHI methylase; an ORF for the BamHI control element. ACCESSION X55285 VERSION X55285.1 KEYWORDS bamHIM gene; bamHIR gene; endonuclease II; methylase. SOURCE Bacillus amyloliquefaciens ORGANISM Bacillus amyloliquefaciens Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus amyloliquefaciens group. REFERENCE 1 (bases 1 to 3014) AUTHORS Benner J.S. JOURNAL Submitted (29-OCT-1990) to the INSDC. J.S. Benner, NEW ENGLAND BIOLABS, 32 TOZER RD, BEVERLEY MA 01915, USA REFERENCE 2 AUTHORS Brooks J.E., Nathan P.D., Landry D., Sznyter L.A., White-Rees P., Ives C.L., Moran L.S., Slatko B.E., Benner J.S. TITLE Characterization of the cloned BamHI restriction modification system: its nucleotide sequence, properties of the methylase, and expression in heterologous hosts JOURNAL Nucleic Acids Res. 19(4), 841-850(1991). PUBMED 1901989 FEATURES Location/Qualifiers source 1..3014 /organism="Bacillus amyloliquefaciens" /plasmid="pACYC184" /strain="H" /mol_type="genomic DNA" /db_xref="taxon:1390" CDS complement(351..1622) /transl_table=11 /transl_except=(pos:1620..1622,aa:Met) /product="BamH I methylase" /note="rare start codon" /db_xref="GOA:P23941" /db_xref="InterPro:IPR002052" /db_xref="InterPro:IPR002295" /db_xref="InterPro:IPR002941" /db_xref="InterPro:IPR029063" /db_xref="UniProtKB/Swiss-Prot:P23941" /protein_id="CAA38998.2" /translation="MRFFSVFDIVKNKANQLGYTETEMYAVLKNYNVNKKDLLAYKEN GVIPTDKVLNGILSYLGMTKVELELKLGRIPAGLEDVFLNNTKEIAKILENKNSVKLN EFNSIQEIKPYFYTDLGKLYNGDCLELFKQVPDENVDTIFADPPFNLDKEYDEGVTDK NSFSGYLDWYYKWIDECIRVLKPGGSLFIYNIPKWNTYLSEYLNRKLNFRNWITVDMK FGLPIQNRLYPANYSLLYYVKGDKPKTFNVQRIPLQTCPHCGREIKDYGGYKNKMNPK GVTLSDVWSDIYPVRHSSSKNRKFNELSVKLLDRIITMSTNEGDVVLDPFGGSGTTFA VSEMLGRKWIGFELGNCEIIKERLKNKDKDKKLLGKVYEEKNKLFPNRVKELRKKNGL WIDDDFRQDHEGNSKGDKKNENNDQISLSLE" regulatory complement(1630..1635) /note="for bamHIM" /regulatory_class="ribosome_binding_site" CDS <1656..1964 /transl_table=11 /product="BamH I control element" /note="ORF" /db_xref="GOA:P23939" /db_xref="InterPro:IPR001387" /db_xref="InterPro:IPR010982" /db_xref="UniProtKB/Swiss-Prot:P23939" /protein_id="CAA39000.1" /translation="PIVYLILSFHLNKRQLLSGGTMTNNIRLLFGQKVRQIRLSKSNM SQEKLAFECDLHRTYISDIERGTRNVSLDNIEKISKALGVQPKDLLDFTTIGNCEQKK " regulatory complement(1671..1700) /note="promoter 2" /regulatory_class="promoter" regulatory 1719..1723 /regulatory_class="ribosome_binding_site" regulatory complement(1736..1763) /note="promoter 1" /regulatory_class="promoter" regulatory 1967..1971 /note="for BamHIR" /regulatory_class="ribosome_binding_site" CDS 1981..2622 /transl_table=11 /product="BamH I endonuclease" /db_xref="GOA:P23940" /db_xref="InterPro:IPR004194" /db_xref="InterPro:IPR011335" /db_xref="InterPro:IPR011338" /db_xref="PDB:1BAM" /db_xref="PDB:1BHM" /db_xref="PDB:1ESG" /db_xref="PDB:2BAM" /db_xref="PDB:3BAM" /db_xref="UniProtKB/Swiss-Prot:P23940" /protein_id="CAA38999.1" /translation="MEVEKEFITDEAKELLSKDKLIQQAYNEVKTSICSPIWPATSKT FTINNTEKNCNGVVPIKELCYTLLEDTYNWYREKPLDILKLEKKKGGPIDVYKEFIEN SELKRVGMEFETGNISSAHRSMNKLLLGLKHGEIDLAIILMPIKQLAYYLTDRVTNFE ELEPYFELTEGQPFIFIGFNAEAYNSNVPLIPKGSDGMSKRSIKKWKDKVENK" BASE COUNT 1016 a 514 c 431 g 1053 t ORIGIN 1 aagcttcctt aattccggaa gataccgatt taatgcatac tgagatagtg gagatcggca 61 aggaaatgca aggtcaatat aagattaatt tccaatgaca tttatgtagt gtttgaagat 121 tcaaaaataa gagaagaatt tttacgaata gatcatcttt ttccatgagg atcgatccat 181 atagactaac ttacaatata aaatggactt ctattaggaa gtccattcac cattttttat 241 ctggtttttc caattcttta atgcagtaaa aatctctcta aagtccttat caaaagtata 301 tttttttttc agtgagtatt taaatatcga ctttttttaa aagataatta tcattctaga 361 cttaatgaaa tttggtcatt gttttcgttt tttttatcac ctttagaatt tccctcatgg 421 tcttgtctaa aatcatcatc aatccataaa ccattttttt tacgtaattc tttaacccta 481 ttagggaaca gcttgttttt ttcttcataa actttaccta acagcttttt atctttgtct 541 ttatttttaa gtctctcttt gataatttca caattcccca actcaaaacc aatccattta 601 cgacctaaca tttcacttac agcaaatgtt gtaccgcttc ctccaaacgg gtctaaaaca 661 acgtcacctt catttgtact catagttatt atacgatcaa gtaatttaac tgataattca 721 ttgaactttc tattttttga actactatgt ctaacagggt aaatatctga ccaaacatca 781 gaaagagtta caccctttgg gttcatttta ttcttgtaac cgccatagtc ttttatttct 841 ctaccacaat gagggcaagt ttgtagaggt atcctttgaa cattaaatgt cttaggttta 901 tcacctttta catagtataa aaggctgtaa tttgctggat ataatctatt ctgaattgga 961 agtccaaatt tcatatctac agttatccag tttctaaaat tcaatttcct atttaagtac 1021 tcagaaaggt aagtgttcca ttttggaata ttataaatga ataaagaacc gcctggtttt 1081 aaaactctga tacactcgtc tatccattta taataccaat ccaaatatcc gctaaaggaa 1141 tttttatctg ttacaccctc atcatactct ttatcaaggt taaatggtgg atcagcaaaa 1201 atagtgtcca cgttttcatc aggaacttgt ttaaacagtt ctaaacaatc cccattgtat 1261 aattttccaa gatcagtata aaaataaggt ttgatttctt gaatagaatt aaattcgttt 1321 agtttaacac tatttttatt ttcgaggatc ttggcaattt cttttgtgtt atttaagaac 1381 acatcctcta acccagccgg tatcctgcct aattttaatt ctaattctac tttagtcatt 1441 ccaagataac taagtattcc attcaacact ttatctgttg gaataactcc attttcttta 1501 taggcgagta aatccttctt attcacattg taatttttca atacagcata catttcagtt 1561 tccgtatacc ctaactgatt cgctttattt ttaacaatgt caaaaacaga aaaaaaacgc 1621 aatattatac acctcgtgta acttatagtc tgtagcctat agtctacttg attttatcat 1681 tccatttaaa caagcgtcaa ttgttatcag gaggtactat gactaacaat atcagattat 1741 tatttggtca aaaagttcgt caaattagat tgtccaaaag taatatgtca caagaaaaac 1801 tagcttttga atgtgaccta cacagaacct acatttctga tattgaacga ggaacaagaa 1861 atgtttcctt agacaatatt gaaaagattt ctaaagcact cggtgttcaa ccaaaggact 1921 tacttgattt tactacaatc ggcaactgtg aacaaaagaa ataagtgggg gcaaattaga 1981 atggaagtag aaaaagagtt tattactgat gaagcaaaag aattactatc taaagataag 2041 ttaattcaac aagcatacaa tgaagttaaa acatctattt gttcacctat ttggccagca 2101 acctcaaaaa ccttcacgat taacaacacc gaaaagaatt gtaacggtgt agtaccaatt 2161 aaagaactat gttacacctt acttgaagat acatataact ggtatagaga aaaacccctt 2221 gatatactta aacttgaaaa gaaaaaaggt ggtccgattg atgtttataa agagttcata 2281 gaaaacagtg aacttaaacg tgtaggtatg gaatttgaaa caggaaatat tagttctgcc 2341 caccgttcaa tgaacaaact tctattagga ttaaaacatg gcgaaattga tttggctatt 2401 atccttatgc ctattaaaca attggcctat tatcttacag atcgtgttac caatttcgag 2461 gaattagaac cttattttga acttactgaa ggacaaccat ttatttttat tggatttaat 2521 gctgaggctt ataattctaa tgtcccttta attcccaaag gttctgacgg tatgtcaaaa 2581 cgctcaatta agaaatggaa agataaagtt gaaaacaaat agtttttggt aaagaggctt 2641 cgatttttgg agtctttttt gttataaaaa tcgctgttcc cattatgaaa aaattgcggt 2701 ttatttgatc attttcaatc tcctttattt ctattatttc attcttctat taaaacatat 2761 atttcctaag tagcgatggg gagaaataga tcttctcaaa agtaacttat taagaaaaag 2821 ttacatttac tttcactaaa atacagatta atttaacaac gttgcaactg aaatagttaa 2881 aaatatgttg cattcaaacg ttgatttttc tgctagaata tcttcacaag tcaatacacc 2941 gagtttatcg tcctctcggc aatgcggcgg aagactgggt ctttcgggaa acggatggcc 3001 agagtatatt aaaa //