LOCUS X13830 4073 bp DNA linear BCT 18-APR-2005 DEFINITION Methanococcus thermolithotrophicus nifHDK gene for nitrogenase (EC 1.7.99.2). ACCESSION X13830 VERSION X13830.1 KEYWORDS nifG gene; nifH gene; nifHDK gene; nifK gene; nitrogen fixation; nitrogenase. SOURCE Methanothermococcus thermolithotrophicus ORGANISM Methanothermococcus thermolithotrophicus Archaea; Euryarchaeota; Methanomada group; Methanococci; Methanococcales; Methanococcaceae; Methanothermococcus. REFERENCE 1 (bases 1 to 4073) AUTHORS Sibold L. JOURNAL Submitted (21-DEC-1988) to the INSDC. Sibold L., Institut Pasteur, Unite de Physiologie Cellulaire, Departement des Biotechnologies, 75724 Paris Cedex 15, France. REFERENCE 2 (bases 1 to 4073) AUTHORS Souillard N., Sibold L. JOURNAL Unpublished. FEATURES Location/Qualifiers source 1..4073 /organism="Methanothermococcus thermolithotrophicus" /mol_type="genomic DNA" /db_xref="taxon:2186" CDS complement(<1..291) /transl_table=11 /note="ORF 96 (AA 1 - 97)" /db_xref="UniProtKB/Swiss-Prot:P25769" /protein_id="CAA32054.1" /translation="MKIEHYIILMVILVGFVTMPLLIPTIKTTQTYSIFNTQENGCSN FLKLMHNSNTIKPLIYPYSNLRDNSILFIIGPDVEFSEDEGHLLRNYVYAGNI" regulatory complement(297..300) /note="pot. ribosome binding site (ORF 96)" /regulatory_class="ribosome_binding_site" regulatory 458..465 /note="pot. TATA box" /regulatory_class="promoter" misc_feature 486..487 /note="put. transcription start sites" repeat_region 495..508 /note="direct repeat 1" repeat_region 528..541 /note="direct repeat 1" regulatory 564..567 /note="pot. ribosome binding site (nifH gene)" /regulatory_class="ribosome_binding_site" CDS 574..1428 /transl_table=11 /note="nifH gene product (AA 1 - 284)" /db_xref="GOA:P25767" /db_xref="InterPro:IPR000392" /db_xref="InterPro:IPR005977" /db_xref="InterPro:IPR027417" /db_xref="InterPro:IPR030655" /db_xref="UniProtKB/Swiss-Prot:P25767" /protein_id="CAA32055.1" /translation="MSFDEIAPDAKKVAIYGKGGIGKSTTTQNTAAALAYFFDKKVMI HGCDPKADSTRMILHGKPQDTVMDVLREEGEEAVTLEKVRKIGFKDILCVESGGPEPG VGCAGRGVITAVDMMRELEGYPDDLDNLFFDVLGDVVCGGFAMPLRDGLAQEIYIVTS GEMMALYAANNIAKGILKYAEQSGVRLGGIICNARNVDGEKELMDEFCDKLGTKLIHY VPRDNIVQKAEFNKMTVIEFDPECNQAKEYRTLAKNIDENDELVKPTPMTMDELEELV VKYGLIDL" regulatory 1490..1494 /note="pot. ribosome binding site (ORF 105)" /regulatory_class="ribosome_binding_site" CDS 1499..1816 /transl_table=11 /note="ORF 105 (AA 1 - 105)" /db_xref="GOA:P25771" /db_xref="InterPro:IPR002187" /db_xref="InterPro:IPR011322" /db_xref="InterPro:IPR015867" /db_xref="InterPro:IPR017918" /db_xref="UniProtKB/Swiss-Prot:P25771" /protein_id="CAA32056.1" /translation="MKMIKAIVRPDKVDDIVDSLENAGYPAFTKINSVGRGKQGGLKV GEIFYDELPKTILLIAVNDDEVDEVVGLIKSSASTGNFGDGKIFIQPITEAYTIRTGE TGI" regulatory 1822..1826 /note="pot. ribosome binding site (ORF 128)" /regulatory_class="ribosome_binding_site" CDS 1831..2217 /transl_table=11 /note="ORF 128 (AA 1 - 128)" /db_xref="GOA:P25770" /db_xref="InterPro:IPR002187" /db_xref="InterPro:IPR011322" /db_xref="InterPro:IPR015867" /db_xref="InterPro:IPR017918" /db_xref="UniProtKB/Swiss-Prot:P25770" /protein_id="CAA32057.1" /translation="MKEVIAIIRPNTVSKTVKALDVVGFPAVTMAECFGRGKQKGYFS ANLPEIVDIQKIIEEGEKEGRFIKYIPKRLISIVVDDADVPLVVGIISKVNRTGSFGD GRIFVLPVEEAIRVRTGETGEIAIGN" misc_feature 2322..2322 /note="transcription start site" regulatory 2395..2400 /note="pot. ribosome binding site (nifD gene)" /regulatory_class="ribosome_binding_site" CDS 2407..3843 /transl_table=11 /note="nifD gene product (AA 1 - 478)" /db_xref="GOA:P20620" /db_xref="InterPro:IPR000318" /db_xref="InterPro:IPR000510" /db_xref="InterPro:IPR010143" /db_xref="UniProtKB/Swiss-Prot:P20620" /protein_id="CAA32058.1" /translation="MPYILLDCDKFIPERMKHTYVYDPEENILPACNTNTVPGDMTER GCAFAGSRGVVGGPIKDAIHMVHGPIGCAYYTWGTRRALSDNEFHRRYCFCTDMQESD IVYGGEKTLEKASLEVMEEFPEASGTFIYTTCPTALIGDNVDAIARNIEKATKKPAIA INSPGFCGVSQSKGHHVFNMTFYKWLKLKRKEFPEKCMPEEEKTPYDVALIGDYNMDW DVAVIKPLLEKIGCRYVTTFTGNASLDELFQLMDVKLNIVHCQRSAEYIAQMINDGFD IPYTRATFFGLSDIAESLYDVAKALDLPKERVDQVIKEEMEAIQPKLDYYKSKLEGKT CMVYVGGPRTWHWIKAMKDLGVEYVAACCTFSHTDDYEKMNKNFKEAGIKDILVIDAP NEPELEEAVKTLDPDFMLVGLKERYLFRKYGVPTINSHSYEEGPYAGYRGFVNFARDV YKAVCHPVWNVLKEGEDKFKNFKGDLNE" regulatory 3825..3831 /note="pot. ribosome binding site" /regulatory_class="ribosome_binding_site" CDS 3836..>4073 /transl_table=11 /note="nifK gene product (AA 1 - 79) (4073 is 1st base in codon)" /db_xref="GOA:P20622" /db_xref="InterPro:IPR000510" /db_xref="UniProtKB/Swiss-Prot:P20622" /protein_id="CAA32059.1" /translation="MSEVNAGEICYVKKQRKGTINPNKICQPIGAMWATVGVKGTIPF VQGSQGCTTYVRYAFNRHFREPVSIATASFHEHAA" BASE COUNT 1468 a 621 c 859 g 1125 t ORIGIN 1 aatatttccg gcatatacgt aatttcttaa aaggtgccct tcatcctcag agaactccac 61 atctgggcct attataaaca aaattgaatt atcccttaaa ttagaatatg gatatattaa 121 cggttttata gtattgctat tgtgcattaa ttttaaaaag ttagaacacc cattttcttg 181 ggtgttaaat atactgtaag tttgggtagt tttaatggta ggaattaata acggcatagt 241 aacaaaacca accaatatca ccattaaaat tatatagtgt tctattttca tatacgcacc 301 ctaaagttta cttctaaaat ttttaaatga agtttataaa atagttttta ttgttacact 361 tctggtattt gcactattta tggtttgata tagttaaact taattttttt atggaagtta 421 gtttaattta ttaatttaaa tttttaaaat aaaaaagttt atatattata aatacatatg 481 tctgcttgtt gacaggaaat atatttccgt gtaattagca taatatggga aatatatttc 541 cgaactaaat aattaaaacc aggggtgttt gtaatgagtt ttgatgaaat tgcaccagat 601 gctaaaaaag tagcaattta tggaaaagga ggtattggga aatcaaccac aacccaaaat 661 accgcagcag cacttgcata ctttttcgat aaaaaagtta tgattcacgg atgtgaccca 721 aaagcagatt caacaagaat gattctccac ggaaaaccac aggataccgt tatggatgta 781 cttagggaag agggggaaga ggcggttact cttgaaaaag taagaaaaat aggatttaaa 841 gacatattat gtgtagaaag tggtggtcca gaacctggtg taggatgtgc aggtagaggg 901 gttattactg cagttgatat gatgagagag ctcgaaggat accctgatga tttagacaac 961 ttgttcttcg atgtccttgg ggacgttgta tgcggtggtt tcgctatgcc gcttagagac 1021 ggtcttgcac aggaaatcta cattgttaca tcaggggaga tgatggcatt atatgccgca 1081 aacaacattg caaaaggtat cttaaagtac gctgaacagt ctggagttag acttggaggt 1141 ataatctgta acgcaagaaa tgtcgatggt gaaaaagagt taatggatga attctgcgat 1201 aaacttggaa ccaaattaat ccactacgtt ccaagggaca acattgtaca gaaagctgaa 1261 ttcaacaaaa tgaccgttat tgagttcgat ccagaatgta atcaagcaaa agaatacaga 1321 actctggcaa aaaacattga tgaaaatgac gaacttgtga aaccaactcc aatgactatg 1381 gatgaattgg aagaattagt tgtaaaatac ggattaattg acttataatt tgtaaaaatg 1441 aaaattaaat taattaatga ctccgctatt aatttttaat aactgatatg gtgacataat 1501 gaagatgata aaggcaattg ttaggccaga taaagttgat gatattgtag attccttaga 1561 aaacgctggt tatccagcat ttacaaaaat aaacagtgtg ggaagaggta agcaaggagg 1621 attgaaggtt ggtgaaatat tctacgatga attgccaaaa accatattat taattgctgt 1681 aaatgacgac gaagtagatg aagttgtggg attgataaaa tcttcagcca gtactggaaa 1741 ctttggagat ggtaaaatct tcatccaacc tattactgag gcatatacaa ttagaaccgg 1801 agaaacagga atttaatagt tggtgaagtt atgaaggagg ttatagcaat aataaggccc 1861 aatacagttt caaaaactgt aaaagcactt gatgtagttg gttttccagc agtaacaatg 1921 gccgagtgct ttggaagggg aaaacaaaaa ggatattttt cagcaaatct acctgagatt 1981 gttgatatcc aaaagatcat agaagaagga gaaaaggaag gaagatttat caaatacatt 2041 ccaaagaggc tgatatccat agtggtggac gatgctgatg ttcctttggt tgttggaata 2101 atctcaaaag taaacagaac aggaagtttt ggagatggac gtatatttgt tttaccagtg 2161 gaagaggcca ttagagtaag gaccggagaa actggagaaa tagccatagg aaactaaatt 2221 agtataaaac gatcagtgaa tcaaagaaac agtgggaaat caaaaaagtt atttacggga 2281 gcgaagcgga ggttatccct ccaagaatta ctcgatttcc caattttcag cccattttaa 2341 catattggaa atcgaaggtt cccatatatc ttatgcttcg ctaacgctca gaaaaggtga 2401 gaatatatgc catacatatt attagattgt gataaattta ttccagaaag aatgaaacac 2461 acgtatgttt acgatcctga agaaaatatt cttccagcat gtaataccaa cacagttcca 2521 ggagacatga ctgaaagagg ctgtgcgttt gctggatcaa gaggtgtggt tggagggcct 2581 ataaaagatg ctattcacat ggttcacgga ccgataggat gtgcctacta cacctgggga 2641 acaagaaggg cattatctga taacgaattc cacagaagat actgcttctg tactgatatg 2701 caggaatcag atatcgtata cggcggtgaa aaaacactgg aaaaagcatc tcttgaagtc 2761 atggaggaat tcccagaagc tagcggtaca ttcatatata caacatgtcc tacggcatta 2821 atcggggata acgtagatgc aatagcaaga aatattgaaa aagctacaaa aaaacctgct 2881 attgctatta acagccctgg tttctgtggt gtatctcagt ctaagggtca ccacgttttc 2941 aacatgacat tctacaaatg gttgaaatta aaaagaaagg aattcccaga aaaatgtatg 3001 cctgaagagg aaaaaacccc ttacgatgta gctctgatcg gggactacaa catggattgg 3061 gatgttgcag ttatcaagcc attacttgaa aaaattggat gcagatatgt gacaacattc 3121 actggaaatg catcattgga tgagctcttc cagttaatgg atgttaaatt aaacatagta 3181 cactgtcaaa gatcagctga gtatattgcc cagatgataa atgatggatt tgatatacca 3241 tatacaagag ctacattctt tgggctgtca gatatagctg aatcacttta cgatgttgct 3301 aaagctctgg atttaccaaa agaaagagtt gaccaggtta taaaagaaga aatggaagcc 3361 atacaaccta aacttgacta ctataagtca aaattggaag gaaaaacctg tatggtatat 3421 gtcgggggac caagaacctg gcactggata aaagctatga aagatcttgg ggtcgaatac 3481 gttgctgcat gctgtacatt ctcccacaca gatgattatg aaaagatgaa caagaacttc 3541 aaagaagctg gaataaaaga catattagtt atagatgcac caaatgaacc agaacttgag 3601 gaagcagtaa aaacacttga tccagacttt atgctcgtag gattaaaaga aagatactta 3661 ttcagaaaat atggagttcc aacaattaat tcccactctt acgaagaagg tccatatgca 3721 ggttacagag gatttgtgaa ctttgcaaga gacgtttaca aagcggtatg ccacccagta 3781 tggaatgtgt taaaagaagg tgaggataaa ttcaaaaact ttaaagggga tttaaatgag 3841 tgaagtcaac gcaggcgaaa tctgttacgt aaaaaaacag agaaaaggaa caattaatcc 3901 aaacaaaata tgccaaccga taggagcaat gtgggcaaca gttggtgtaa aaggtacaat 3961 tccatttgtt caaggttccc aggggtgtac cacctatgtt aggtatgcat tcaacagaca 4021 ctttagggaa cctgtatcta tagctacagc atctttccac gaacatgctg cag //